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The map label for this gene is ygdH [H]

Identifier: 145300081

GI number: 145300081

Start: 3444269

End: 3445774

Strand: Direct

Name: ygdH [H]

Synonym: ASA_3181

Alternate gene names: 145300081

Gene position: 3444269-3445774 (Clockwise)

Preceding gene: 145300080

Following gene: 145300082

Centisome position: 73.24

GC content: 58.76

Gene sequence:

>1506_bases
GTGGCGGCTAAAAAAGCAGCAAACGCACTTCTCCCCTATTCCCCTGCCCTACCGCTTACATCTACTATCAAATTCAAGGG
ATGCCACATGGCATCCTGTTTTCTCCCCAGGGAAAAGCACAACGATAACAAGCGAGTGAAAGGGGAACTTATGATTACGC
ACATCAATCCTGTGGGCAGCATGGACTTGCTGTCACAACTCGAGGTGGATCGCCTCAAACAGACTGCTTCCAGCGATATC
TATCAACTGTTTCGCAACTGCTCGCTGGCGGTGCTCAACTCAGGTAGCCATACCGACAGCTCCAAAGAGATACTGGAGCG
TTTCAAATCCTTTGATATCCATGTGATCCGGCGCGAGCGCGGGGTCAAGCTCGAACTGTTCAATGCCCCCGAGCATGCCT
TTGTGGATGGCGAGATCATCCGTGGCATTCAGGAGCACCTCTTCTCCGTGCTGCGCGACATCCTCTATGTGTCGACCCAG
CTGGAGTCGAACCGACTGGTCAACCTGACCAGCTCCACCCATATCACCAACGTGGTGTTCGCCATACTGCGCAACGCCAA
GGCGATCCTGCCGGGGGCGGATCCCAATCTGGTGGTCTGCTGGGGCGGCCACTCCATCAACCCCATTGAATACCAGTACA
CCCGCGAGGTCGGCAGCGAGCTGGGATTGCGCGAGCTCAACATCTGCACCGGTTGCGGTCCGGGTGCCATGGAGGGGCCC
ATGAAGGGGGGCGCCGTCGGCCACGCCAAGCAGCGGGTACGCAATGGCCGCTACATAGGTCTGACCGAACCCTCCATCAT
TGCCGCCGAGCCGCCCAACCCCATCGTCAACGAGCTGGTGATACTGCCGGATATCGAGAAACGGCTGGAGGCTTTCGTGC
GTCTGGGCCACGGCATCATCATATTCCCAGGCGGGGTCGGCACGGCCGAAGAGCTGCTCTATCTGCTCGGCATCATGATG
CATCCGGCCAACGAGCGCCAACCCATGCCGATTATCCTGACCGGTCCGAAAGAGAGCGCCGATTACTTCCGCGCCATCGA
TGACTTCGTCAAGGCTACCCTGGGCGAACCCGCTACCAGCCTCTACCGGATCATCGTTGGCGATGCGCCGGAAGTGGCAC
GGGTGATGAAGGAAGCGATGCCGAAAATTCGCGAATATCGCAAATCGGTCGGCGATGCCTACTCCTTCAACTGGTCCCTC
AAGATCGAGCCCGAGTTCCAGCTGCCATTCGAGCCGGATCACGCCAACATGGCCAGCCTGGATCTGCACCGCAACCAGCC
GCCCCAGCTGCTGGCGGCGAACCTGCGCCGTGCCTTCTCCGGCATCGTCGCCGGTAACGTGAAGGAAGGGGGCATCCGCG
CCATCGAGAAGAAGGGCCCCTTCAAGCTGCACGGCGACAAGGAGCTGATGCACCTGATGGACAAGCTGCTGGAGAGCTTC
GTCAAACAACAGCGCATGAAGCTGCCTGGCACCCAATACGTCCCCTGTTACGAGATTGTTCGTTAA

Upstream 100 bases:

>100_bases
GGGATCACACCACGGATGCGTTCGAGCGAGCCGACAAGGCGCTCTACAGCTCCAAGCACTCGGGTCGGGATCAGGTCAAT
CTGGCCTGAATCCAGGCTGA

Downstream 100 bases:

>100_bases
AGGCTGTTAGTCGCCGGTGACCAGCGACAACATGGCACAAGGGGCGCAGCAGCGCCCCTTCCTTTTGCCATCTGTATGAG
CATCTGACGCTCTGGCACCA

Product: lysine decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MAAKKAANALLPYSPALPLTSTIKFKGCHMASCFLPREKHNDNKRVKGELMITHINPVGSMDLLSQLEVDRLKQTASSDI
YQLFRNCSLAVLNSGSHTDSSKEILERFKSFDIHVIRRERGVKLELFNAPEHAFVDGEIIRGIQEHLFSVLRDILYVSTQ
LESNRLVNLTSSTHITNVVFAILRNAKAILPGADPNLVVCWGGHSINPIEYQYTREVGSELGLRELNICTGCGPGAMEGP
MKGGAVGHAKQRVRNGRYIGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFVRLGHGIIIFPGGVGTAEELLYLLGIMM
HPANERQPMPIILTGPKESADYFRAIDDFVKATLGEPATSLYRIIVGDAPEVARVMKEAMPKIREYRKSVGDAYSFNWSL
KIEPEFQLPFEPDHANMASLDLHRNQPPQLLAANLRRAFSGIVAGNVKEGGIRAIEKKGPFKLHGDKELMHLMDKLLESF
VKQQRMKLPGTQYVPCYEIVR

Sequences:

>Translated_501_residues
MAAKKAANALLPYSPALPLTSTIKFKGCHMASCFLPREKHNDNKRVKGELMITHINPVGSMDLLSQLEVDRLKQTASSDI
YQLFRNCSLAVLNSGSHTDSSKEILERFKSFDIHVIRRERGVKLELFNAPEHAFVDGEIIRGIQEHLFSVLRDILYVSTQ
LESNRLVNLTSSTHITNVVFAILRNAKAILPGADPNLVVCWGGHSINPIEYQYTREVGSELGLRELNICTGCGPGAMEGP
MKGGAVGHAKQRVRNGRYIGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFVRLGHGIIIFPGGVGTAEELLYLLGIMM
HPANERQPMPIILTGPKESADYFRAIDDFVKATLGEPATSLYRIIVGDAPEVARVMKEAMPKIREYRKSVGDAYSFNWSL
KIEPEFQLPFEPDHANMASLDLHRNQPPQLLAANLRRAFSGIVAGNVKEGGIRAIEKKGPFKLHGDKELMHLMDKLLESF
VKQQRMKLPGTQYVPCYEIVR
>Mature_500_residues
AAKKAANALLPYSPALPLTSTIKFKGCHMASCFLPREKHNDNKRVKGELMITHINPVGSMDLLSQLEVDRLKQTASSDIY
QLFRNCSLAVLNSGSHTDSSKEILERFKSFDIHVIRRERGVKLELFNAPEHAFVDGEIIRGIQEHLFSVLRDILYVSTQL
ESNRLVNLTSSTHITNVVFAILRNAKAILPGADPNLVVCWGGHSINPIEYQYTREVGSELGLRELNICTGCGPGAMEGPM
KGGAVGHAKQRVRNGRYIGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFVRLGHGIIIFPGGVGTAEELLYLLGIMMH
PANERQPMPIILTGPKESADYFRAIDDFVKATLGEPATSLYRIIVGDAPEVARVMKEAMPKIREYRKSVGDAYSFNWSLK
IEPEFQLPFEPDHANMASLDLHRNQPPQLLAANLRRAFSGIVAGNVKEGGIRAIEKKGPFKLHGDKELMHLMDKLLESFV
KQQRMKLPGTQYVPCYEIVR

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=71.0176991150443, Blast_Score=676, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 55725; Mature: 55594

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKKAANALLPYSPALPLTSTIKFKGCHMASCFLPREKHNDNKRVKGELMITHINPVGS
CCCCHHHCCCCCCCCCCCCCCEEEECCCEEHHHCCCCCCCCCCCEEEEEEEEEEECCCCC
MDLLSQLEVDRLKQTASSDIYQLFRNCSLAVLNSGSHTDSSKEILERFKSFDIHVIRRER
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECC
GVKLELFNAPEHAFVDGEIIRGIQEHLFSVLRDILYVSTQLESNRLVNLTSSTHITNVVF
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
AILRNAKAILPGADPNLVVCWGGHSINPIEYQYTREVGSELGLRELNICTGCGPGAMEGP
HHHHCCCEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
MKGGAVGHAKQRVRNGRYIGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFVRLGHGII
CCCCCCHHHHHHHCCCCEEEECCCCEEECCCCCHHHHCEEECCCHHHHHHHHHHHCCCEE
IFPGGVGTAEELLYLLGIMMHPANERQPMPIILTGPKESADYFRAIDDFVKATLGEPATS
EEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHHH
LYRIIVGDAPEVARVMKEAMPKIREYRKSVGDAYSFNWSLKIEPEFQLPFEPDHANMASL
HHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEECCCCCCCCCEEEE
DLHRNQPPQLLAANLRRAFSGIVAGNVKEGGIRAIEKKGPFKLHGDKELMHLMDKLLESF
ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHH
VKQQRMKLPGTQYVPCYEIVR
HHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure 
AAKKAANALLPYSPALPLTSTIKFKGCHMASCFLPREKHNDNKRVKGELMITHINPVGS
CCCHHHCCCCCCCCCCCCCCEEEECCCEEHHHCCCCCCCCCCCEEEEEEEEEEECCCCC
MDLLSQLEVDRLKQTASSDIYQLFRNCSLAVLNSGSHTDSSKEILERFKSFDIHVIRRER
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECC
GVKLELFNAPEHAFVDGEIIRGIQEHLFSVLRDILYVSTQLESNRLVNLTSSTHITNVVF
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
AILRNAKAILPGADPNLVVCWGGHSINPIEYQYTREVGSELGLRELNICTGCGPGAMEGP
HHHHCCCEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
MKGGAVGHAKQRVRNGRYIGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFVRLGHGII
CCCCCCHHHHHHHCCCCEEEECCCCEEECCCCCHHHHCEEECCCHHHHHHHHHHHCCCEE
IFPGGVGTAEELLYLLGIMMHPANERQPMPIILTGPKESADYFRAIDDFVKATLGEPATS
EEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHHH
LYRIIVGDAPEVARVMKEAMPKIREYRKSVGDAYSFNWSLKIEPEFQLPFEPDHANMASL
HHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEECCCCCCCCCEEEE
DLHRNQPPQLLAANLRRAFSGIVAGNVKEGGIRAIEKKGPFKLHGDKELMHLMDKLLESF
ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHH
VKQQRMKLPGTQYVPCYEIVR
HHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]