Click here to switch to the map view.

The map label for this gene is xni [H]

Identifier: 145300082

GI number: 145300082

Start: 3445940

End: 3446737

Strand: Direct

Name: xni [H]

Synonym: ASA_3182

Alternate gene names: 145300082

Gene position: 3445940-3446737 (Clockwise)

Preceding gene: 145300081

Following gene: 145300083

Centisome position: 73.28

GC content: 62.16

Gene sequence:

>798_bases
ATGCCACACCTGCTTATCATCGATGCCCTCAACCTCATCCGCCGTCTGCACGCGGTGCAAGCCCAGCAGGCGCTGACCCC
GGCCCAGGCGCTCATCGCCACCCGTGCCAATCTCATCAATACCTGCCGCAAGCTGCTGACGGGCAGCGAGCCGACCCATG
TCATAGCGGTATTCGACGGAGAGATACACAGCTGGCGCAAAGAGGTCTACCCGGCCTACAAGGAGGGGCGAACCCCCATG
CCGGTGGAGCTGCGTGAAGGTCTGAACACGCTGCAGGATGCCTTCTGGGAGTGTGGCGTAGACGCTTTGCTCTCCCAGAC
CGATGAGGCGGACGATCTCATCGCCACCCTGGCCAGCGGCATCGCCCAGCACGGGGCAAGGGCCACCATCATCTCTACCG
ACAAGGGGTTCTGTCAGCTCATCTGCCCGCAGATCCAGATCAGGGACTATTTCAACAAACGCTGGTTGGATGCCGCCTTC
GTCGAGCAACAATATGGCGTGGTCCCGGCCCAGCTGGTGGATTTCTGGGCCCTGACCGGCATCAGCGGATCCAATATCAA
GGGGGTGCCCGGCATAGGCCCCAAGACGGCGACCCAATTGCTGCAGCAATATGGCAGCCTGTCGGCGCTGCTCGCGGCCT
GTCAACAGGAGGAGGCCAGCAAGCCCTTGCTCAAGCTGCGCCAGTATCAGGACGATGCCCTGCTGGCCCAGCGTCTGGTC
CGGCTGCAGCGTGATATTCCCCTGGGTTTCAACTTGCGGGAAATACGCTATCCCCCAGCACCCGAGAGCGAGGCATGA

Upstream 100 bases:

>100_bases
TGCCATCTGTATGAGCATCTGACGCTCTGGCACCACCTGAACACTGTCATCAAGGCTGCCAGTTGTTACAATGGCGCGTC
CTGACTGCCAAGAGTCCCCC

Downstream 100 bases:

>100_bases
CACCGGCTTCCCCCATTGACCAGCAATCCTGCCAATCATGACGGGACTCACCCTTGCTGTTGACAAAAACAGATAGAATG
TAAAGAAACATGGAGGGTTA

Product: exodeoxyribonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MPHLLIIDALNLIRRLHAVQAQQALTPAQALIATRANLINTCRKLLTGSEPTHVIAVFDGEIHSWRKEVYPAYKEGRTPM
PVELREGLNTLQDAFWECGVDALLSQTDEADDLIATLASGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAF
VEQQYGVVPAQLVDFWALTGISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALLAQRLV
RLQRDIPLGFNLREIRYPPAPESEA

Sequences:

>Translated_265_residues
MPHLLIIDALNLIRRLHAVQAQQALTPAQALIATRANLINTCRKLLTGSEPTHVIAVFDGEIHSWRKEVYPAYKEGRTPM
PVELREGLNTLQDAFWECGVDALLSQTDEADDLIATLASGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAF
VEQQYGVVPAQLVDFWALTGISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALLAQRLV
RLQRDIPLGFNLREIRYPPAPESEA
>Mature_264_residues
PHLLIIDALNLIRRLHAVQAQQALTPAQALIATRANLINTCRKLLTGSEPTHVIAVFDGEIHSWRKEVYPAYKEGRTPMP
VELREGLNTLQDAFWECGVDALLSQTDEADDLIATLASGIAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFV
EQQYGVVPAQLVDFWALTGISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALLAQRLVR
LQRDIPLGFNLREIRYPPAPESEA

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=256, Percent_Identity=46.484375, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1790294, Length=272, Percent_Identity=33.8235294117647, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR003583
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 29335; Mature: 29204

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHLLIIDALNLIRRLHAVQAQQALTPAQALIATRANLINTCRKLLTGSEPTHVIAVFDG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
EIHSWRKEVYPAYKEGRTPMPVELREGLNTLQDAFWECGVDALLSQTDEADDLIATLASG
HHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
IAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVVPAQLVDFWALTG
HHHCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
ISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALLAQRLV
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RLQRDIPLGFNLREIRYPPAPESEA
HHHHCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
PHLLIIDALNLIRRLHAVQAQQALTPAQALIATRANLINTCRKLLTGSEPTHVIAVFDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
EIHSWRKEVYPAYKEGRTPMPVELREGLNTLQDAFWECGVDALLSQTDEADDLIATLASG
HHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
IAQHGARATIISTDKGFCQLICPQIQIRDYFNKRWLDAAFVEQQYGVVPAQLVDFWALTG
HHHCCCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
ISGSNIKGVPGIGPKTATQLLQQYGSLSALLAACQQEEASKPLLKLRQYQDDALLAQRLV
CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RLQRDIPLGFNLREIRYPPAPESEA
HHHHCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA