| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is appF [H]
Identifier: 145300005
GI number: 145300005
Start: 3349530
End: 3350510
Strand: Direct
Name: appF [H]
Synonym: ASA_3104
Alternate gene names: 145300005
Gene position: 3349530-3350510 (Clockwise)
Preceding gene: 145300004
Following gene: 145300006
Centisome position: 71.23
GC content: 63.51
Gene sequence:
>981_bases ATGCAAATCGCCCAAACCGACGCGCCCATCATCGAAGTCCAGCACCTTTACAAGGACTTCCCCGTCAACTCCAATGCCAT CAAGAGCGGCAAGATGCGGGCCCTCTCCGACATCACCTTCAACCTGCACCGGGGCCGCGCCCTGGCGGTGGTGGGGGAGT CAGGCTCCGGCAAGAGCACCATCGCCAAGATGTACAAGCTCTCCAGCGGCCGCATCCTCTATCGCGGCCGGGATCTGGAG GAGTTCAACAAGGGCACGGCACTGCTCGACTACCGCCAGAGCGTGCAGATGGTGTGGCAAGATCCGTTCGGTTCGCTCAA CCCGACCCACACCATCTATCACCATATCGCCCGCCCCCTGCTGCTGCACAGCAAGGTGATCGACAAGAAAGAGCTGCCCG AGATGGTCTATACCCTGCTCGAAAAGGTGGGGCTCACCCCGGCCAAGGCCACGGCGGCCAAGTACCCCCACCAGCTCTCC GGCGGCCAGCGCCAGCGGGTCAACATAGCCCGCAACCTGGCGGTGGAGGCGGAGGTGGTGCTGGCGGACGAACCCACCTC CATGCTCGACGTCTCCATTCGCATCGGCATCCTCAACCTGATGGAGCAGATGAAAAACGAGCTGGGGGTCTCCATGCTCT ACATCACCCACGACATCGCCACCGCACGCTATGTGGCGGAAGACTTGGCGGTGATGTACGTGGGTCACATGGTGGAGTGG GGCGAGGTGGACGAGATACTGCACCACCCGCAGCACCCCTACACCCAGCTGCTCATCTCGGCGGTGCCCGACCCCGAGAA GAGCATCCACGCCGCGCTGGAGGGGGGCCGCAAGGGGGAGATACCGCTCTGGACGCCGGACTCCTGTGGCTGCCCCTTCG CCGGGCGCTGCAACCAGGCGATGGCCCGCTGCAATGATGAGCTGCCCCCCATCACCAAACTCGCCGACAACCACTTCGTG CGCTGCTATCTCTACGAGTGA
Upstream 100 bases:
>100_bases CGGGGCAACAAACCGCCTGCCACCTTTATGAGGTGCAGGATGAGCAACCGGATCCCGTTTTCTATCTGGACAAGGCCGCT GGCTGTTAAGGATGTCTGTC
Downstream 100 bases:
>100_bases TACTCGCCACTAAAACGGCCGGACAAGCCAGTCCGGCCATGCCTCGATGCGGGGCCACCACGGCCCCGCTATGTGCCTCA CAGCAATGGGGTGAACCACA
Product: ABC-type oligopeptide transporter, ATP binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MQIAQTDAPIIEVQHLYKDFPVNSNAIKSGKMRALSDITFNLHRGRALAVVGESGSGKSTIAKMYKLSSGRILYRGRDLE EFNKGTALLDYRQSVQMVWQDPFGSLNPTHTIYHHIARPLLLHSKVIDKKELPEMVYTLLEKVGLTPAKATAAKYPHQLS GGQRQRVNIARNLAVEAEVVLADEPTSMLDVSIRIGILNLMEQMKNELGVSMLYITHDIATARYVAEDLAVMYVGHMVEW GEVDEILHHPQHPYTQLLISAVPDPEKSIHAALEGGRKGEIPLWTPDSCGCPFAGRCNQAMARCNDELPPITKLADNHFV RCYLYE
Sequences:
>Translated_326_residues MQIAQTDAPIIEVQHLYKDFPVNSNAIKSGKMRALSDITFNLHRGRALAVVGESGSGKSTIAKMYKLSSGRILYRGRDLE EFNKGTALLDYRQSVQMVWQDPFGSLNPTHTIYHHIARPLLLHSKVIDKKELPEMVYTLLEKVGLTPAKATAAKYPHQLS GGQRQRVNIARNLAVEAEVVLADEPTSMLDVSIRIGILNLMEQMKNELGVSMLYITHDIATARYVAEDLAVMYVGHMVEW GEVDEILHHPQHPYTQLLISAVPDPEKSIHAALEGGRKGEIPLWTPDSCGCPFAGRCNQAMARCNDELPPITKLADNHFV RCYLYE >Mature_326_residues MQIAQTDAPIIEVQHLYKDFPVNSNAIKSGKMRALSDITFNLHRGRALAVVGESGSGKSTIAKMYKLSSGRILYRGRDLE EFNKGTALLDYRQSVQMVWQDPFGSLNPTHTIYHHIARPLLLHSKVIDKKELPEMVYTLLEKVGLTPAKATAAKYPHQLS GGQRQRVNIARNLAVEAEVVLADEPTSMLDVSIRIGILNLMEQMKNELGVSMLYITHDIATARYVAEDLAVMYVGHMVEW GEVDEILHHPQHPYTQLLISAVPDPEKSIHAALEGGRKGEIPLWTPDSCGCPFAGRCNQAMARCNDELPPITKLADNHFV RCYLYE
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=240, Percent_Identity=27.0833333333333, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI42490749, Length=240, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI116734710, Length=236, Percent_Identity=25, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI105990541, Length=213, Percent_Identity=27.2300469483568, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789962, Length=332, Percent_Identity=37.6506024096386, Blast_Score=226, Evalue=1e-60, Organism=Escherichia coli, GI1787500, Length=300, Percent_Identity=38.6666666666667, Blast_Score=210, Evalue=1e-55, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=39.4736842105263, Blast_Score=197, Evalue=9e-52, Organism=Escherichia coli, GI1787759, Length=327, Percent_Identity=32.4159021406728, Blast_Score=177, Evalue=9e-46, Organism=Escherichia coli, GI48994883, Length=333, Percent_Identity=33.3333333333333, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1789963, Length=306, Percent_Identity=34.3137254901961, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1787758, Length=320, Percent_Identity=31.5625, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1788506, Length=242, Percent_Identity=37.603305785124, Blast_Score=151, Evalue=5e-38, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=33.2046332046332, Blast_Score=144, Evalue=1e-35, Organism=Escherichia coli, GI1787548, Length=341, Percent_Identity=26.6862170087977, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1789890, Length=232, Percent_Identity=34.9137931034483, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=35.042735042735, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1786398, Length=234, Percent_Identity=33.3333333333333, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=33.1797235023041, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI87081791, Length=262, Percent_Identity=31.2977099236641, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787029, Length=246, Percent_Identity=33.739837398374, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=33.7552742616034, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1789032, Length=239, Percent_Identity=29.7071129707113, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=35.2112676056338, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788225, Length=257, Percent_Identity=33.4630350194552, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788761, Length=250, Percent_Identity=32, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=35.9649122807018, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790162, Length=243, Percent_Identity=32.0987654320988, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787712, Length=230, Percent_Identity=31.304347826087, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=33.6363636363636, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1788450, Length=251, Percent_Identity=30.2788844621514, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786563, Length=230, Percent_Identity=33.4782608695652, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=32.1608040201005, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787370, Length=230, Percent_Identity=29.1304347826087, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1788644, Length=135, Percent_Identity=38.5185185185185, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=28.4518828451883, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081709, Length=249, Percent_Identity=26.9076305220884, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=28.6363636363636, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786703, Length=217, Percent_Identity=31.3364055299539, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=27.9816513761468, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87082267, Length=270, Percent_Identity=28.1481481481481, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788210, Length=240, Percent_Identity=28.3333333333333, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786253, Length=233, Percent_Identity=29.1845493562232, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=27.1889400921659, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1789586, Length=257, Percent_Identity=26.0700389105058, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786319, Length=233, Percent_Identity=25.3218884120172, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI48995001, Length=277, Percent_Identity=26.3537906137184, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790190, Length=240, Percent_Identity=26.25, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790739, Length=260, Percent_Identity=25, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=207, Percent_Identity=28.0193236714976, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787112, Length=232, Percent_Identity=28.8793103448276, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1786653, Length=227, Percent_Identity=28.6343612334802, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786981, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790534, Length=239, Percent_Identity=25.5230125523013, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI2367384, Length=243, Percent_Identity=26.3374485596708, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193208177, Length=237, Percent_Identity=29.535864978903, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI212646699, Length=255, Percent_Identity=27.843137254902, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI115534520, Length=242, Percent_Identity=30.1652892561983, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=30.3964757709251, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=30.3964757709251, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=30.3964757709251, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193202349, Length=232, Percent_Identity=29.7413793103448, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565938, Length=278, Percent_Identity=28.0575539568345, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25146777, Length=268, Percent_Identity=27.9850746268657, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558664, Length=232, Percent_Identity=29.3103448275862, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=29.6943231441048, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71996550, Length=219, Percent_Identity=32.8767123287671, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115535101, Length=233, Percent_Identity=26.6094420600858, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=280, Percent_Identity=25, Blast_Score=79, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=250, Percent_Identity=27.6, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6323959, Length=237, Percent_Identity=29.1139240506329, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6319856, Length=243, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI85726357, Length=251, Percent_Identity=27.0916334661355, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI23397593, Length=275, Percent_Identity=29.0909090909091, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36438; Mature: 36438
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIAQTDAPIIEVQHLYKDFPVNSNAIKSGKMRALSDITFNLHRGRALAVVGESGSGKST CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEECCEEEEEEECCCCCHHH IAKMYKLSSGRILYRGRDLEEFNKGTALLDYRQSVQMVWQDPFGSLNPTHTIYHHIARPL HHHHHHCCCCEEEEECCCHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LLHSKVIDKKELPEMVYTLLEKVGLTPAKATAAKYPHQLSGGQRQRVNIARNLAVEAEVV HHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHHHHHHHHHEEEEEEE LADEPTSMLDVSIRIGILNLMEQMKNELGVSMLYITHDIATARYVAEDLAVMYVGHMVEW EECCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC GEVDEILHHPQHPYTQLLISAVPDPEKSIHAALEGGRKGEIPLWTPDSCGCPFAGRCNQA CCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHH MARCNDELPPITKLADNHFVRCYLYE HHHCCCCCCCHHHHCCCCEEEEEEEC >Mature Secondary Structure MQIAQTDAPIIEVQHLYKDFPVNSNAIKSGKMRALSDITFNLHRGRALAVVGESGSGKST CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHEEEEECCEEEEEEECCCCCHHH IAKMYKLSSGRILYRGRDLEEFNKGTALLDYRQSVQMVWQDPFGSLNPTHTIYHHIARPL HHHHHHCCCCEEEEECCCHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LLHSKVIDKKELPEMVYTLLEKVGLTPAKATAAKYPHQLSGGQRQRVNIARNLAVEAEVV HHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHHHHHHHHHEEEEEEE LADEPTSMLDVSIRIGILNLMEQMKNELGVSMLYITHDIATARYVAEDLAVMYVGHMVEW EECCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC GEVDEILHHPQHPYTQLLISAVPDPEKSIHAALEGGRKGEIPLWTPDSCGCPFAGRCNQA CCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHH MARCNDELPPITKLADNHFVRCYLYE HHHCCCCCCCHHHHCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]