| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
Click here to switch to the map view.
The map label for this gene is oppD [C]
Identifier: 145300004
GI number: 145300004
Start: 3348499
End: 3349518
Strand: Direct
Name: oppD [C]
Synonym: ASA_3103
Alternate gene names: 145300004
Gene position: 3348499-3349518 (Clockwise)
Preceding gene: 145300003
Following gene: 145300005
Centisome position: 71.21
GC content: 62.75
Gene sequence:
>1020_bases ATGAAGACCCCACCCCTGCTGTCGGTACGCAACCTCTGCGTCGACTACATCACCGAGAGCGGCGACGTGCGCGCCGTCAA CTCGGTCAGCTTTGACATAGCCCCCGGCGAGGTATTCGGCCTCGCCGGCGAGTCCGGCTGCGGCAAGTCCACCATCGCCT TCTCGGTGGCCCGGCTGCACAAGCCGCCCGCCTACATCAGTGGCGGCGAAATCCTGTTCAAGGGAGAAAACATACTCCAC TACGGCGAAGAGCGGTTGCGCTCCTATCGCTGGCAACAGGTCTCTGTGGTGTTCCAGTCCGCCATGAACGCGCTCAACCC AGTGCTGCGCATGGAGGAGCAGTTCTGCGACGTGCTGCTGGCCCACAATCCCGGCATGACCCGTTATGAGGCGATCAAGC GCGCCCAGGTGCTGCTCGAGATAGTCGACATCCATCCGAGCCGGCTCAAGGATTATCCGCACCAGTTTTCCGGCGGCATG CGCCAGCGGCTGGTGATCGCCATCGCCATGGCACTCAACCCCGAGCTCTTGATCATGGACGAGCCGACCACGGCGCTGGA TGTGGTGGTGCAGCGGGAGATACTGCAGAAGGTCTACGCCCTGAAAGAGCAGTTCAACTTCTCCATTCTGTTCATCACCC ACGATCTCTCCTTGATGGTCGAATTCTGCGATCGCATCGGCATCATGTACGCCGGTGAGCTGATCGAGGTAGCGCCGTCC AAGGCGATCCTGACCTCGCCCCTGCACCCCTATACCCGCGGGCTCGGCAACTCGTTCCCGCCCCTGCACGGCCCGAAAAC CGTGCTGGAGGGGATCCCGGGCACCCCGCTCAACCTGCTGGAGGTGCCGGTCGGCTGCCGCTTCCAGGCCCGCTGTGGCA AGGTGCACGATCGCTGCCGCCAGGAGTACACCCGCCTGGTCGAGATCCGCCCGGGGCAACAAACCGCCTGCCACCTTTAT GAGGTGCAGGATGAGCAACCGGATCCCGTTTTCTATCTGGACAAGGCCGCTGGCTGTTAA
Upstream 100 bases:
>100_bases CCATCGACGAGATAGCCAACCCTCAGCTGCGATCCCATAAAGGGCTCAACCGCTGGAAAAAACTCGCCGCGCCCGTCGCA GCACCACAGGAGAGGACAGC
Downstream 100 bases:
>100_bases GGATGTCTGTCATGCAAATCGCCCAAACCGACGCGCCCATCATCGAAGTCCAGCACCTTTACAAGGACTTCCCCGTCAAC TCCAATGCCATCAAGAGCGG
Product: ABC-type oligopeptide transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MKTPPLLSVRNLCVDYITESGDVRAVNSVSFDIAPGEVFGLAGESGCGKSTIAFSVARLHKPPAYISGGEILFKGENILH YGEERLRSYRWQQVSVVFQSAMNALNPVLRMEEQFCDVLLAHNPGMTRYEAIKRAQVLLEIVDIHPSRLKDYPHQFSGGM RQRLVIAIAMALNPELLIMDEPTTALDVVVQREILQKVYALKEQFNFSILFITHDLSLMVEFCDRIGIMYAGELIEVAPS KAILTSPLHPYTRGLGNSFPPLHGPKTVLEGIPGTPLNLLEVPVGCRFQARCGKVHDRCRQEYTRLVEIRPGQQTACHLY EVQDEQPDPVFYLDKAAGC
Sequences:
>Translated_339_residues MKTPPLLSVRNLCVDYITESGDVRAVNSVSFDIAPGEVFGLAGESGCGKSTIAFSVARLHKPPAYISGGEILFKGENILH YGEERLRSYRWQQVSVVFQSAMNALNPVLRMEEQFCDVLLAHNPGMTRYEAIKRAQVLLEIVDIHPSRLKDYPHQFSGGM RQRLVIAIAMALNPELLIMDEPTTALDVVVQREILQKVYALKEQFNFSILFITHDLSLMVEFCDRIGIMYAGELIEVAPS KAILTSPLHPYTRGLGNSFPPLHGPKTVLEGIPGTPLNLLEVPVGCRFQARCGKVHDRCRQEYTRLVEIRPGQQTACHLY EVQDEQPDPVFYLDKAAGC >Mature_339_residues MKTPPLLSVRNLCVDYITESGDVRAVNSVSFDIAPGEVFGLAGESGCGKSTIAFSVARLHKPPAYISGGEILFKGENILH YGEERLRSYRWQQVSVVFQSAMNALNPVLRMEEQFCDVLLAHNPGMTRYEAIKRAQVLLEIVDIHPSRLKDYPHQFSGGM RQRLVIAIAMALNPELLIMDEPTTALDVVVQREILQKVYALKEQFNFSILFITHDLSLMVEFCDRIGIMYAGELIEVAPS KAILTSPLHPYTRGLGNSFPPLHGPKTVLEGIPGTPLNLLEVPVGCRFQARCGKVHDRCRQEYTRLVEIRPGQQTACHLY EVQDEQPDPVFYLDKAAGC
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9665248, Length=219, Percent_Identity=31.0502283105023, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI27436953, Length=212, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=28.0373831775701, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI42741659, Length=222, Percent_Identity=26.1261261261261, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9955968, Length=227, Percent_Identity=28.1938325991189, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9955966, Length=226, Percent_Identity=28.3185840707965, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI45243524, Length=226, Percent_Identity=28.3185840707965, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27477115, Length=212, Percent_Identity=28.3018867924528, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI6005701, Length=212, Percent_Identity=28.3018867924528, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9955963, Length=223, Percent_Identity=27.3542600896861, Blast_Score=69, Evalue=9e-12, Organism=Escherichia coli, GI48994883, Length=314, Percent_Identity=42.6751592356688, Blast_Score=252, Evalue=3e-68, Organism=Escherichia coli, GI1787759, Length=300, Percent_Identity=40.3333333333333, Blast_Score=220, Evalue=1e-58, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=37.6947040498442, Blast_Score=217, Evalue=9e-58, Organism=Escherichia coli, GI1788506, Length=277, Percent_Identity=42.9602888086643, Blast_Score=203, Evalue=2e-53, Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=36.0594795539033, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=32.8947368421053, Blast_Score=178, Evalue=6e-46, Organism=Escherichia coli, GI1789962, Length=333, Percent_Identity=32.7327327327327, Blast_Score=177, Evalue=8e-46, Organism=Escherichia coli, GI1787500, Length=302, Percent_Identity=33.7748344370861, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1787758, Length=296, Percent_Identity=32.0945945945946, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=36.078431372549, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=35.377358490566, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1787547, Length=255, Percent_Identity=30.5882352941176, Blast_Score=127, Evalue=9e-31, Organism=Escherichia coli, GI1789032, Length=232, Percent_Identity=34.9137931034483, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1786398, Length=258, Percent_Identity=30.6201550387597, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=30.46875, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI87081709, Length=263, Percent_Identity=29.6577946768061, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI87081791, Length=249, Percent_Identity=31.7269076305221, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1790162, Length=263, Percent_Identity=30.4182509505703, Blast_Score=104, Evalue=9e-24, Organism=Escherichia coli, GI1789890, Length=242, Percent_Identity=30.5785123966942, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=31.6455696202532, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1787712, Length=262, Percent_Identity=29.7709923664122, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788450, Length=236, Percent_Identity=27.9661016949153, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786703, Length=213, Percent_Identity=33.8028169014084, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787370, Length=228, Percent_Identity=28.9473684210526, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789864, Length=255, Percent_Identity=28.2352941176471, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=31.3084112149533, Blast_Score=85, Evalue=8e-18, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=25.3112033195021, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1786345, Length=268, Percent_Identity=27.6119402985075, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=28.3261802575107, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789672, Length=239, Percent_Identity=30.9623430962343, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=225, Percent_Identity=27.5555555555556, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=29.5964125560538, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=28.8888888888889, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=26.9709543568465, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786698, Length=239, Percent_Identity=28.8702928870293, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789873, Length=222, Percent_Identity=30.1801801801802, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=29.0748898678414, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1787792, Length=242, Percent_Identity=27.6859504132231, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1790467, Length=241, Percent_Identity=26.5560165975104, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87081782, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=28.1512605042017, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=30.6382978723404, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=28.7081339712919, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786872, Length=209, Percent_Identity=31.1004784688995, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1788644, Length=252, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1789586, Length=229, Percent_Identity=26.6375545851528, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI48994943, Length=247, Percent_Identity=26.7206477732794, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788002, Length=230, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788472, Length=248, Percent_Identity=27.0161290322581, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1790190, Length=234, Percent_Identity=24.3589743589744, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1789593, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=27.4038461538462, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=25.5707762557078, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193202349, Length=239, Percent_Identity=29.2887029288703, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17558664, Length=249, Percent_Identity=32.1285140562249, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17541710, Length=222, Percent_Identity=27.4774774774775, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17510237, Length=261, Percent_Identity=24.904214559387, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71983516, Length=244, Percent_Identity=24.5901639344262, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71983510, Length=244, Percent_Identity=24.5901639344262, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71983523, Length=244, Percent_Identity=24.5901639344262, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=30.4721030042918, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193209708, Length=226, Percent_Identity=28.7610619469027, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567265, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI212646699, Length=253, Percent_Identity=31.2252964426877, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567269, Length=223, Percent_Identity=29.1479820627803, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71984940, Length=243, Percent_Identity=28.8065843621399, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193211015, Length=239, Percent_Identity=28.4518828451883, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996809, Length=239, Percent_Identity=28.4518828451883, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193211017, Length=239, Percent_Identity=28.4518828451883, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71992290, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115535101, Length=223, Percent_Identity=26.9058295964126, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=228, Percent_Identity=27.1929824561404, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115534520, Length=209, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17511077, Length=229, Percent_Identity=26.2008733624454, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17569143, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=247, Percent_Identity=26.7206477732794, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=28.7671232876712, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=28.7671232876712, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24643674, Length=242, Percent_Identity=28.099173553719, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=29.4392523364486, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=29.4392523364486, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI17136662, Length=210, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24659289, Length=221, Percent_Identity=29.8642533936652, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 37881; Mature: 37881
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTPPLLSVRNLCVDYITESGDVRAVNSVSFDIAPGEVFGLAGESGCGKSTIAFSVARLH CCCCCCHHHHHHHHHHHCCCCCEEEEECEEEECCCCCEEEECCCCCCCCHHHHHHHHHHC KPPAYISGGEILFKGENILHYGEERLRSYRWQQVSVVFQSAMNALNPVLRMEEQFCDVLL CCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHNPGMTRYEAIKRAQVLLEIVDIHPSRLKDYPHQFSGGMRQRLVIAIAMALNPELLIMD HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEEE EPTTALDVVVQREILQKVYALKEQFNFSILFITHDLSLMVEFCDRIGIMYAGELIEVAPS CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHCHHHHCHHHHHCCC KAILTSPLHPYTRGLGNSFPPLHGPKTVLEGIPGTPLNLLEVPVGCRFQARCGKVHDRCR CHHHCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHEECCCCCEEHHHHHHHHHHHH QEYTRLVEIRPGQQTACHLYEVQDEQPDPVFYLDKAAGC HHHHHEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCC >Mature Secondary Structure MKTPPLLSVRNLCVDYITESGDVRAVNSVSFDIAPGEVFGLAGESGCGKSTIAFSVARLH CCCCCCHHHHHHHHHHHCCCCCEEEEECEEEECCCCCEEEECCCCCCCCHHHHHHHHHHC KPPAYISGGEILFKGENILHYGEERLRSYRWQQVSVVFQSAMNALNPVLRMEEQFCDVLL CCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHNPGMTRYEAIKRAQVLLEIVDIHPSRLKDYPHQFSGGMRQRLVIAIAMALNPELLIMD HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCCHHHHHHHHHHHHCCCEEEEEE EPTTALDVVVQREILQKVYALKEQFNFSILFITHDLSLMVEFCDRIGIMYAGELIEVAPS CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHCHHHHCHHHHHCCC KAILTSPLHPYTRGLGNSFPPLHGPKTVLEGIPGTPLNLLEVPVGCRFQARCGKVHDRCR CHHHCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHEECCCCCEEHHHHHHHHHHHH QEYTRLVEIRPGQQTACHLYEVQDEQPDPVFYLDKAAGC HHHHHEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]