Click here to switch to the map view.

The map label for this gene is smpA [H]

Identifier: 145299832

GI number: 145299832

Start: 3143052

End: 3143390

Strand: Direct

Name: smpA [H]

Synonym: ASA_2918

Alternate gene names: 145299832

Gene position: 3143052-3143390 (Clockwise)

Preceding gene: 145299831

Following gene: 145299833

Centisome position: 66.84

GC content: 59.29

Gene sequence:

>339_bases
ATGCGGATGAAACACCTGATTGCCGCGGCCCTGACCGCCCTCACCCTGTCCGGTTGCAGCTTGGTCTATCGCATCGATAT
TCCCCAGGGCAACTATGTGGAACAAAAACAGGTCGACAAACTGCGCCAGGGCATGACCCGCGAACAGGTCGAGTTCGTGC
TGGGCTCCGCCATGTTGCGCGATGGCTTTGACCCGAACACCTGGTATTACCTCTATGAATTCCAGCCAGGTCGCGGCGAA
AAAGAGCGCAAAGAGCTCACCGTGACCTTCGCCAACGACAAGCTGGCCACGGTCACCGGCGACTTCCCGTTACCAGCGGC
CTTCCACACCCCGCTCTGA

Upstream 100 bases:

>100_bases
GGCGCCCTCTGGCTATTTTTTCCATGGCTTTTACTTCCGCCAAGGGAGTAGGTATGATTCGGCCAGCGTAAAAGACTTGA
ATGGATGATCTGAACTCGAT

Downstream 100 bases:

>100_bases
TCGCATTCACAAAACCGGCCCAGCGCCGGTTTTGTTTTATCTCGTTCACAAGGAGTGCTTGATGAGCCAGATCCTGATTG
CCGGTGCCAGCGGACTGATC

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MRMKHLIAAALTALTLSGCSLVYRIDIPQGNYVEQKQVDKLRQGMTREQVEFVLGSAMLRDGFDPNTWYYLYEFQPGRGE
KERKELTVTFANDKLATVTGDFPLPAAFHTPL

Sequences:

>Translated_112_residues
MRMKHLIAAALTALTLSGCSLVYRIDIPQGNYVEQKQVDKLRQGMTREQVEFVLGSAMLRDGFDPNTWYYLYEFQPGRGE
KERKELTVTFANDKLATVTGDFPLPAAFHTPL
>Mature_112_residues
MRMKHLIAAALTALTLSGCSLVYRIDIPQGNYVEQKQVDKLRQGMTREQVEFVLGSAMLRDGFDPNTWYYLYEFQPGRGE
KERKELTVTFANDKLATVTGDFPLPAAFHTPL

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=108, Percent_Identity=42.5925925925926, Blast_Score=86, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 12728; Mature: 12728

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMKHLIAAALTALTLSGCSLVYRIDIPQGNYVEQKQVDKLRQGMTREQVEFVLGSAMLR
CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
DGFDPNTWYYLYEFQPGRGEKERKELTVTFANDKLATVTGDFPLPAAFHTPL
CCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MRMKHLIAAALTALTLSGCSLVYRIDIPQGNYVEQKQVDKLRQGMTREQVEFVLGSAMLR
CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
DGFDPNTWYYLYEFQPGRGEKERKELTVTFANDKLATVTGDFPLPAAFHTPL
CCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA