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The map label for this gene is nodD1 [H]

Identifier: 145299804

GI number: 145299804

Start: 3110560

End: 3111471

Strand: Direct

Name: nodD1 [H]

Synonym: ASA_2885

Alternate gene names: 145299804

Gene position: 3110560-3111471 (Clockwise)

Preceding gene: 145299803

Following gene: 145299805

Centisome position: 66.15

GC content: 61.84

Gene sequence:

>912_bases
ATGAATTTACGAGGCGTCGACCTCAACCTGCTGGTGGTGCTCAAGGCCCTGCTGGAGGAACGCAACACCACCAAGGCCGC
CGAGCGACTCGCCATGAGCCAGCCAGCCGTCAGTCGGGCTCTGGCCCGCCTGCGACTGCTCTATGACGATCCCCTGCTGA
TCCGCACCCCCCTGGGAATGGAGCCTACCGCAAGGGCACAGGCACTCTTGCTGCCACTGCGGGAAATACTGCACGACATA
GAGCAGACCTTCAGCCAGCCCGAACAGCACGACCCGAGCCAGTTCGAGGGAGTACTGCGCATCGGTGCCCACACCTATGT
GGAATATGTGATGATGCCAAGCCTGCTGGGGCGCCTGCAGCAGCAAGCGCCCAACCTGCGCATCCACATGGTGCCCCTCA
ATGCAGATTACGAGGACCAGCTCGACGAAGGGGTTGTCAGCATGGTGATCAGCAAGCAGGACGAGGTACCCGGTCGCTTT
CGCCGCATCCCGCTGTTTGAAGACAAGCTGATCTGCGCCGCCCACAGCAGCCATCCCTTTCAGGGTCAGGTGCTCTGCAT
AGAGTCTTTCGCCAAGGCACAGCATCTGCTGGTCGCCCCCCGTGGCAGCGAAGGTGGCATAGTCGATGACCTGCTCGCAG
CGCACGGCATGACCCGCCATACCCCCTTGATAGTGCAGAGCTTTCTGGCAGCGCCCTTCATACTGCCCTATGCCCCCCTG
CTGCTGACCTCGCCAGCCAGGGTGCTGCGCCCGCTGATGCCGCTGCTGGATCTGGTGGAGTACGAGACCCGCTTTACCCT
GCCGACCTTCGAGGTCAGCCTCATCCGCCATCGCCGCGACGACAACCACGCCATGCTCAACTGGTTCGAGTCAGAATTGC
ATCTCTGGTGCCAATCCCTCTGCGAGCTATGA

Upstream 100 bases:

>100_bases
GCTGATTTATCCAAGCTTCATGCTGACCATCGACGGGAGTGAGACTAAAGTGAAGGCCCTGCTTAAGGAAATGATTTATT
AGTATTCCATTATGCACAGA

Downstream 100 bases:

>100_bases
TCCCCTCCGGCGCCCCGTGCGCCGGGCTCTTTTCCCCTCGCCACTGCGTTTGACTCTGGCCCTTTGGCTGGCGACTCCCC
TGGTAAAATCCCCCGAGTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNLRGVDLNLLVVLKALLEERNTTKAAERLAMSQPAVSRALARLRLLYDDPLLIRTPLGMEPTARAQALLLPLREILHDI
EQTFSQPEQHDPSQFEGVLRIGAHTYVEYVMMPSLLGRLQQQAPNLRIHMVPLNADYEDQLDEGVVSMVISKQDEVPGRF
RRIPLFEDKLICAAHSSHPFQGQVLCIESFAKAQHLLVAPRGSEGGIVDDLLAAHGMTRHTPLIVQSFLAAPFILPYAPL
LLTSPARVLRPLMPLLDLVEYETRFTLPTFEVSLIRHRRDDNHAMLNWFESELHLWCQSLCEL

Sequences:

>Translated_303_residues
MNLRGVDLNLLVVLKALLEERNTTKAAERLAMSQPAVSRALARLRLLYDDPLLIRTPLGMEPTARAQALLLPLREILHDI
EQTFSQPEQHDPSQFEGVLRIGAHTYVEYVMMPSLLGRLQQQAPNLRIHMVPLNADYEDQLDEGVVSMVISKQDEVPGRF
RRIPLFEDKLICAAHSSHPFQGQVLCIESFAKAQHLLVAPRGSEGGIVDDLLAAHGMTRHTPLIVQSFLAAPFILPYAPL
LLTSPARVLRPLMPLLDLVEYETRFTLPTFEVSLIRHRRDDNHAMLNWFESELHLWCQSLCEL
>Mature_303_residues
MNLRGVDLNLLVVLKALLEERNTTKAAERLAMSQPAVSRALARLRLLYDDPLLIRTPLGMEPTARAQALLLPLREILHDI
EQTFSQPEQHDPSQFEGVLRIGAHTYVEYVMMPSLLGRLQQQAPNLRIHMVPLNADYEDQLDEGVVSMVISKQDEVPGRF
RRIPLFEDKLICAAHSSHPFQGQVLCIESFAKAQHLLVAPRGSEGGIVDDLLAAHGMTRHTPLIVQSFLAAPFILPYAPL
LLTSPARVLRPLMPLLDLVEYETRFTLPTFEVSLIRHRRDDNHAMLNWFESELHLWCQSLCEL

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=178, Percent_Identity=35.3932584269663, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790147, Length=241, Percent_Identity=25.3112033195021, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI87081766, Length=198, Percent_Identity=24.7474747474747, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34322; Mature: 34322

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRGVDLNLLVVLKALLEERNTTKAAERLAMSQPAVSRALARLRLLYDDPLLIRTPLGM
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCC
EPTARAQALLLPLREILHDIEQTFSQPEQHDPSQFEGVLRIGAHTYVEYVMMPSLLGRLQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQAPNLRIHMVPLNADYEDQLDEGVVSMVISKQDEVPGRFRRIPLFEDKLICAAHSSHPF
HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCEEEEECCCCCC
QGQVLCIESFAKAQHLLVAPRGSEGGIVDDLLAAHGMTRHTPLIVQSFLAAPFILPYAPL
CCEEEHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LLTSPARVLRPLMPLLDLVEYETRFTLPTFEVSLIRHRRDDNHAMLNWFESELHLWCQSL
HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
CEL
HCC
>Mature Secondary Structure
MNLRGVDLNLLVVLKALLEERNTTKAAERLAMSQPAVSRALARLRLLYDDPLLIRTPLGM
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCC
EPTARAQALLLPLREILHDIEQTFSQPEQHDPSQFEGVLRIGAHTYVEYVMMPSLLGRLQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQAPNLRIHMVPLNADYEDQLDEGVVSMVISKQDEVPGRFRRIPLFEDKLICAAHSSHPF
HCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCEEEEECCCCCC
QGQVLCIESFAKAQHLLVAPRGSEGGIVDDLLAAHGMTRHTPLIVQSFLAAPFILPYAPL
CCEEEHHHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LLTSPARVLRPLMPLLDLVEYETRFTLPTFEVSLIRHRRDDNHAMLNWFESELHLWCQSL
HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
CEL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2215216 [H]