| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is hex [H]
Identifier: 145299761
GI number: 145299761
Start: 3057104
End: 3059449
Strand: Direct
Name: hex [H]
Synonym: ASA_2841
Alternate gene names: 145299761
Gene position: 3057104-3059449 (Clockwise)
Preceding gene: 145299756
Following gene: 145299765
Centisome position: 65.01
GC content: 60.06
Gene sequence:
>2346_bases ATGCGTGTAAGACGTTCTCTGGTCAGCATGGCGCTCGCCATGGCCCTGACAGCTCCGGCCGCCATGGCCATGACCCAATC CCAGTTGGACGGGATGGGTCAGGGAGTCGACCTCAAGTATCAAGTCATCGATAACACCCTGACAGATGGCAACAGCTTCA GGGCGAGTATCACCCTGCGAAATAACACCGCCCAGCCTCTGCCGGCAACGGGCTGGAGCCTCTGGTTCAGCCATATTCGT GACGTGAGCAAGCTCTACACCGACCAATTCAAGGTCACCCATGTCAACGGCGACATCTTCAAACTGGAGCCAACGGCTCA ATTCCGGGGGGTGCCCGCCGGCCAGTCGTTCGAGATCGCCTTCGATGGTGGAAACTGGCAGGTTGCCAAGAGTGACGTGA TGCCCAACTGGTACTTCGCCGCACAAGATGCCAAGGGCAACCCCATCACAGCGCTGCTTGCCAGCACCAGTAATACCCAT AACGGCGTGGTCCCGACGGAGCCCTCGGCCGAGCTGCCGTTTGTGGGTGATTTCAGCACGCCCAAACAGTGGAAACGCTA TAACGGCCCGAGCAATATCGACCGCTGGAATCCGTTCACAGCCGCCGAGCGCTATGCCCGTAACGCCGATCTGTCCGTAC AGGCTCATCCGGTCGGCGTCGTGCCAACCCCCGCCGAGCTGCAGCTGGCCACCGGCAATGTCACCCTAGGTGCGGACTGG GTTGTCGTGTTTGATAACGGCTATGAGGAGCAGGCTCGCTGGTTGGCGGCCAACCTTGGTCTGCCAGCGCAGAGTTGGTC ACCCAACACCAGCAAGGTGATTCGCATGGGTTGGGGACAGGTGCAGATAGACGGGCAGGCCAAGTGGGAAGAGGCCTATC GCCTCAAGGTTGACAGCAAGAGCCAAACCATCCAGATCACGGCCGCAGATGCAGCCGGCGCCCTCTATGCCGCACAGTCG CTGCTGCAACTGGAGCAACAGCGCGTCGTGCCTGCGTTGACCATCGCCGACGCCCCGCGCTTTGCCTATCGTGGCCTCTC TCTCGACGCTTCGCGTAACTTCCGTAGCAAACAGGCCGTGCTCGCCTTGCCGGAGCTGACCGACGTTGGTGCTCGTCGTT GCCACGATCCGGCCGAGCGCACCTGTATTCTGCCCTTCCTGGGTGCCGGTCCGAACGGCACCGCACAGTCTGACGGTTTC TACAGTGCCGACGATTACCGCGAGATCCTGAGTCACGCCAAGGCGCTCAATATCGAGGTTATCCCCGAGATCGACATGCC TGGCCACGCTCACGCCGCCATCAAGGCGATGGATGCGCGCAGTGCCCGTTTGAACGAAGCCGGTCAGCCACAGCAAGCCG CCGAGTATCGTCTCTCCGATCCGGATGACCGTACCGACTACACCTCGGTACAGATGTTCAAGGACAACGCCATGAACGTC TGTATGGAGTCTACCTACCGCTTCATCGACACCGTCGTGGGTGAGTTGGTGGCCCTGTATCAGGGTATCCAGCCGCTCAA GACCTTCCACTTCGGTGGGGATGAAGTCGCTGGCGCCTGGAAGCAGTCGCCGGCCTGCCAGGCGTTCTTTGCCAACAACA GCCAAGGGATCAAGGATCCGTCCCAGCTCAGTCAGTATTTTGTCGAGCGAGTCTCAGGTATTACCTCTGCCCACGGCCTC AATATGGGAGGCTGGGAAGATGGCTTGATGCATGACAACAAGGTCTATCCGCGCAGCAACCTAGCCAACGCACTGGTAAG CGGCAATGCCTGGCAGAATATCTGGGAATGGGGTGTGGCCGATCGCGCCTATAAGCTGGCTAACGCCGGTTATGGTGTCA TCTACAACCAGGCTAGTCACCTCTACTTCGACCATCCGAACGAGCCGGATCCGGCCGAGCGTGGCTACTATTGGGCCCCG CGCTTTACCGATACCCGAAAGACCTTCGGTTTCATGCCGGACGATCTGTTTGCCAACGCCGATTACACCCGTGCCGGCAA GCCGATCACCAAGGCTGAGGTGGTCGATGGCGCCACCACCAAGACTCTGGAGCAACCGGCCAACGTGCTGGGGATGCAGG GTTCGCTCTGGGCCGAAACCGTGCGCACCGACAACCAGTTCGAAGAGATGCTCTTCCCACGGGTCTTTGCCCTCGCCGAG CGGGCCTGGCATAAAGCAGGCTGGGAGGCCAACAGCCCGTTCCCAGGTCTGACCATCCAGTACTCCATTGATGGCGGCAG CTGGCAAGCCTATGACGCAGCGAATGCGCCGAGCGTCTCAGGAAAGGTAGTTGTGCGTACTGCCTCCGGCCTGCGTGCAG GTCGAAACGTGGTTATTAACAACTAA
Upstream 100 bases:
>100_bases CAAAACGCTCCGTGCGACACCCTTTTTGTGTATAAAAAACACCCTCACAGCGCTACCCTTGCTTCGCCAAGAAAATTAAC AACCAAAAAGGACGGTAACA
Downstream 100 bases:
>100_bases ATGAAATTTTGAACTATCAGTTGTGCAACGATAGATAATCCATCTGTCGCATATTTATAACTCTGAGTTAAAAAGCAAAC TGATTTACTGATATGAAAAA
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Chitobiase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 781; Mature: 781
Protein sequence:
>781_residues MRVRRSLVSMALAMALTAPAAMAMTQSQLDGMGQGVDLKYQVIDNTLTDGNSFRASITLRNNTAQPLPATGWSLWFSHIR DVSKLYTDQFKVTHVNGDIFKLEPTAQFRGVPAGQSFEIAFDGGNWQVAKSDVMPNWYFAAQDAKGNPITALLASTSNTH NGVVPTEPSAELPFVGDFSTPKQWKRYNGPSNIDRWNPFTAAERYARNADLSVQAHPVGVVPTPAELQLATGNVTLGADW VVVFDNGYEEQARWLAANLGLPAQSWSPNTSKVIRMGWGQVQIDGQAKWEEAYRLKVDSKSQTIQITAADAAGALYAAQS LLQLEQQRVVPALTIADAPRFAYRGLSLDASRNFRSKQAVLALPELTDVGARRCHDPAERTCILPFLGAGPNGTAQSDGF YSADDYREILSHAKALNIEVIPEIDMPGHAHAAIKAMDARSARLNEAGQPQQAAEYRLSDPDDRTDYTSVQMFKDNAMNV CMESTYRFIDTVVGELVALYQGIQPLKTFHFGGDEVAGAWKQSPACQAFFANNSQGIKDPSQLSQYFVERVSGITSAHGL NMGGWEDGLMHDNKVYPRSNLANALVSGNAWQNIWEWGVADRAYKLANAGYGVIYNQASHLYFDHPNEPDPAERGYYWAP RFTDTRKTFGFMPDDLFANADYTRAGKPITKAEVVDGATTKTLEQPANVLGMQGSLWAETVRTDNQFEEMLFPRVFALAE RAWHKAGWEANSPFPGLTIQYSIDGGSWQAYDAANAPSVSGKVVVRTASGLRAGRNVVINN
Sequences:
>Translated_781_residues MRVRRSLVSMALAMALTAPAAMAMTQSQLDGMGQGVDLKYQVIDNTLTDGNSFRASITLRNNTAQPLPATGWSLWFSHIR DVSKLYTDQFKVTHVNGDIFKLEPTAQFRGVPAGQSFEIAFDGGNWQVAKSDVMPNWYFAAQDAKGNPITALLASTSNTH NGVVPTEPSAELPFVGDFSTPKQWKRYNGPSNIDRWNPFTAAERYARNADLSVQAHPVGVVPTPAELQLATGNVTLGADW VVVFDNGYEEQARWLAANLGLPAQSWSPNTSKVIRMGWGQVQIDGQAKWEEAYRLKVDSKSQTIQITAADAAGALYAAQS LLQLEQQRVVPALTIADAPRFAYRGLSLDASRNFRSKQAVLALPELTDVGARRCHDPAERTCILPFLGAGPNGTAQSDGF YSADDYREILSHAKALNIEVIPEIDMPGHAHAAIKAMDARSARLNEAGQPQQAAEYRLSDPDDRTDYTSVQMFKDNAMNV CMESTYRFIDTVVGELVALYQGIQPLKTFHFGGDEVAGAWKQSPACQAFFANNSQGIKDPSQLSQYFVERVSGITSAHGL NMGGWEDGLMHDNKVYPRSNLANALVSGNAWQNIWEWGVADRAYKLANAGYGVIYNQASHLYFDHPNEPDPAERGYYWAP RFTDTRKTFGFMPDDLFANADYTRAGKPITKAEVVDGATTKTLEQPANVLGMQGSLWAETVRTDNQFEEMLFPRVFALAE RAWHKAGWEANSPFPGLTIQYSIDGGSWQAYDAANAPSVSGKVVVRTASGLRAGRNVVINN >Mature_781_residues MRVRRSLVSMALAMALTAPAAMAMTQSQLDGMGQGVDLKYQVIDNTLTDGNSFRASITLRNNTAQPLPATGWSLWFSHIR DVSKLYTDQFKVTHVNGDIFKLEPTAQFRGVPAGQSFEIAFDGGNWQVAKSDVMPNWYFAAQDAKGNPITALLASTSNTH NGVVPTEPSAELPFVGDFSTPKQWKRYNGPSNIDRWNPFTAAERYARNADLSVQAHPVGVVPTPAELQLATGNVTLGADW VVVFDNGYEEQARWLAANLGLPAQSWSPNTSKVIRMGWGQVQIDGQAKWEEAYRLKVDSKSQTIQITAADAAGALYAAQS LLQLEQQRVVPALTIADAPRFAYRGLSLDASRNFRSKQAVLALPELTDVGARRCHDPAERTCILPFLGAGPNGTAQSDGF YSADDYREILSHAKALNIEVIPEIDMPGHAHAAIKAMDARSARLNEAGQPQQAAEYRLSDPDDRTDYTSVQMFKDNAMNV CMESTYRFIDTVVGELVALYQGIQPLKTFHFGGDEVAGAWKQSPACQAFFANNSQGIKDPSQLSQYFVERVSGITSAHGL NMGGWEDGLMHDNKVYPRSNLANALVSGNAWQNIWEWGVADRAYKLANAGYGVIYNQASHLYFDHPNEPDPAERGYYWAP RFTDTRKTFGFMPDDLFANADYTRAGKPITKAEVVDGATTKTLEQPANVLGMQGSLWAETVRTDNQFEEMLFPRVFALAE RAWHKAGWEANSPFPGLTIQYSIDGGSWQAYDAANAPSVSGKVVVRTASGLRAGRNVVINN
Specific function: Hydrolysis of terminal, non-reducing N-acetyl-beta-D- glucosamine residues in chitobiose and higher analogs, and in glycoproteins [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Caenorhabditis elegans, GI17569815, Length=454, Percent_Identity=23.1277533039648, Blast_Score=81, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 85708; Mature: 85708
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVRRSLVSMALAMALTAPAAMAMTQSQLDGMGQGVDLKYQVIDNTLTDGNSFRASITLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEE NNTAQPLPATGWSLWFSHIRDVSKLYTDQFKVTHVNGDIFKLEPTAQFRGVPAGQSFEIA CCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCHHHCCCCCCCEEEEE FDGGNWQVAKSDVMPNWYFAAQDAKGNPITALLASTSNTHNGVVPTEPSAELPFVGDFST EECCCEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC PKQWKRYNGPSNIDRWNPFTAAERYARNADLSVQAHPVGVVPTPAELQLATGNVTLGADW CHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCEEECCCE VVVFDNGYEEQARWLAANLGLPAQSWSPNTSKVIRMGWGQVQIDGQAKWEEAYRLKVDSK EEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCEEEEEEECCC SQTIQITAADAAGALYAAQSLLQLEQQRVVPALTIADAPRFAYRGLSLDASRNFRSKQAV CCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCCCCCCCCCCEE LALPELTDVGARRCHDPAERTCILPFLGAGPNGTAQSDGFYSADDYREILSHAKALNIEV EECCCHHHHHHHHCCCHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE IPEIDMPGHAHAAIKAMDARSARLNEAGQPQQAAEYRLSDPDDRTDYTSVQMFKDNAMNV EECCCCCCCCHHHHEEHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCHHHH CMESTYRFIDTVVGELVALYQGIQPLKTFHFGGDEVAGAWKQSPACQAFFANNSQGIKDP HHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCHHHCCHHCCCCCEEEEECCCCCCCCCH SQLSQYFVERVSGITSAHGLNMGGWEDGLMHDNKVYPRSNLANALVSGNAWQNIWEWGVA HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCH DRAYKLANAGYGVIYNQASHLYFDHPNEPDPAERGYYWAPRFTDTRKTFGFMPDDLFANA HHHHHHHCCCCEEEEECCCEEEECCCCCCCHHHCCEEECCCCCCCHHHCCCCCHHHHCCC DYTRAGKPITKAEVVDGATTKTLEQPANVLGMQGSLWAETVRTDNQFEEMLFPRVFALAE CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH RAWHKAGWEANSPFPGLTIQYSIDGGSWQAYDAANAPSVSGKVVVRTASGLRAGRNVVIN HHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEC N C >Mature Secondary Structure MRVRRSLVSMALAMALTAPAAMAMTQSQLDGMGQGVDLKYQVIDNTLTDGNSFRASITLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEEEE NNTAQPLPATGWSLWFSHIRDVSKLYTDQFKVTHVNGDIFKLEPTAQFRGVPAGQSFEIA CCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCHHHCCCCCCCEEEEE FDGGNWQVAKSDVMPNWYFAAQDAKGNPITALLASTSNTHNGVVPTEPSAELPFVGDFST EECCCEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC PKQWKRYNGPSNIDRWNPFTAAERYARNADLSVQAHPVGVVPTPAELQLATGNVTLGADW CHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCEEECCCE VVVFDNGYEEQARWLAANLGLPAQSWSPNTSKVIRMGWGQVQIDGQAKWEEAYRLKVDSK EEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCEEEEEEECCC SQTIQITAADAAGALYAAQSLLQLEQQRVVPALTIADAPRFAYRGLSLDASRNFRSKQAV CCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCCCCCCCCCCCCCEE LALPELTDVGARRCHDPAERTCILPFLGAGPNGTAQSDGFYSADDYREILSHAKALNIEV EECCCHHHHHHHHCCCHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE IPEIDMPGHAHAAIKAMDARSARLNEAGQPQQAAEYRLSDPDDRTDYTSVQMFKDNAMNV EECCCCCCCCHHHHEEHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCHHHH CMESTYRFIDTVVGELVALYQGIQPLKTFHFGGDEVAGAWKQSPACQAFFANNSQGIKDP HHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCHHHCCHHCCCCCEEEEECCCCCCCCCH SQLSQYFVERVSGITSAHGLNMGGWEDGLMHDNKVYPRSNLANALVSGNAWQNIWEWGVA HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCH DRAYKLANAGYGVIYNQASHLYFDHPNEPDPAERGYYWAPRFTDTRKTFGFMPDDLFANA HHHHHHHCCCCEEEEECCCEEEECCCCCCCHHHCCEEECCCCCCCHHHCCCCCHHHHCCC DYTRAGKPITKAEVVDGATTKTLEQPANVLGMQGSLWAETVRTDNQFEEMLFPRVFALAE CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH RAWHKAGWEANSPFPGLTIQYSIDGGSWQAYDAANAPSVSGKVVVRTASGLRAGRNVVIN HHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEC N C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8341694 [H]