Click here to switch to the map view.

The map label for this gene is tsr [C]

Identifier: 138896948

GI number: 138896948

Start: 3423241

End: 3424545

Strand: Reverse

Name: tsr [C]

Synonym: GTNG_3317

Alternate gene names: 138896948

Gene position: 3424545-3423241 (Counterclockwise)

Preceding gene: 138896949

Following gene: 138896947

Centisome position: 96.46

GC content: 53.33

Gene sequence:

>1305_bases
ATGAGGGGGAAAACAATGGGGGGAAAACGCCGTTCGTTTGGCTTGCGTCTGAAGCTTGTCGTCTTTACAACAGTGCTAGC
AATTATTACATATTCGACGAGCGCCTTGTACTTGTACGTGCTGTATGATTGGTGGTTTGCATCATTCAACAAAAGCGTCT
TCACGATTGTTGTATTGCTGCTCGGCATTTTTTGGTCAGGAGTGCTCGCCTATGTCGCCGCTGGCTGGATTACGAAGCCG
CTGCAACATCTCGAGGAAGCGGCCACTAAGGCGGCTAGCGGGCACATTGAAGAAGACGTTCCGCTTCCTTCATCCAATGA
TGAAATTCGTTCGCTTGCTGTCGCTTTTAACCACATGCTTCATCATCTGCGCATCGTGATCACTAACATTGAAGAAAATA
CAGCACGTACAAATGAGAAGACATCGGAAATGAGCCAAGCATCTGAAACAGCGGCAAACCGCGCTCGCGATATTGCGGCG
ACGATTGATGATATTTCCAAAGGGGCAACCGCTTCAGCGGAAGCGATTCAAGAAGCGGCTGAGGCCGCTGAAGATGTGCT
CGCCATTGCCATACGGGTACAAGAAACGGCGGAACGTGCGGAACAGTCCGTACATGAGATGGCAGAAACGCTCAAGACAA
GCCAAGATATCACTCATTCGCTCATCAATGGCATCGGGCAGCTGGCCGACGATCAAGAACTGTCAAGGGCCGCTGTCAAA
CAGCTTGAGAGACATGCCCATCAAATCGGAAACATTACATTGCTTGTTGCCGATATGGCTGAGCAAACGAACTTGCTAGC
ACTCAATGCTTCGATTGAAGCCGCCCGTGCCGGTGAACATGGCCGGGGCTTTGCGGTCGTGGCCGAAGAAGTGCGCAAAC
TAGCTGATGAAAGCGCTACGGCAGTGAAACAAATTGCGGAATTGGTCAACAATATTCAAAACGAGGTTGCCCGGGTGGCC
ATGCAAATGGATAAGCAGGCCGCCACCGCCAACGCTGAGGCGGTCAGAGGCAAGCAGACGAATGAGGCCATTGCCGCTAT
GGTATCTTCAGCGGGTGAAGTGATTCGCGCCGTCCATGATATCGCTGAGCTGGCGAAAAGCCAAATGAGGCACATGGAGC
GGGTGGCGGCACAGACGCAAGAAGTGGCGGCGATCGCTGAGCAGACATCCGCTGGTGCGCTCGAAGTCGCGGCGGCGACC
GAAGCACAGACAGAAGCAGTCAGCAATGTGCACAAACTGGCGAACGAGCTTGTCGAACAGGCGGAACAGCTGCAGGCGGC
AGTCGCCCGTTTTCGCGCCGACTAA

Upstream 100 bases:

>100_bases
GGCTCGGTTGAGGTGTACCGGGCAGCTCGCGATGAGTTAGCGGCGCTTATTGACCGCCTGGCGGAAAAATTGCAAGAGAA
ACAATAATATCACGTGGTTA

Downstream 100 bases:

>100_bases
AATGACCGGTGCGCTCAGACATGCTGTCGACTTCACTGGCGGAAACAAACGAACCGCACACGATCTAGCATAATAAGGTA
ACTGTATCGATGAAGCGCTC

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MRGKTMGGKRRSFGLRLKLVVFTTVLAIITYSTSALYLYVLYDWWFASFNKSVFTIVVLLLGIFWSGVLAYVAAGWITKP
LQHLEEAATKAASGHIEEDVPLPSSNDEIRSLAVAFNHMLHHLRIVITNIEENTARTNEKTSEMSQASETAANRARDIAA
TIDDISKGATASAEAIQEAAEAAEDVLAIAIRVQETAERAEQSVHEMAETLKTSQDITHSLINGIGQLADDQELSRAAVK
QLERHAHQIGNITLLVADMAEQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESATAVKQIAELVNNIQNEVARVA
MQMDKQAATANAEAVRGKQTNEAIAAMVSSAGEVIRAVHDIAELAKSQMRHMERVAAQTQEVAAIAEQTSAGALEVAAAT
EAQTEAVSNVHKLANELVEQAEQLQAAVARFRAD

Sequences:

>Translated_434_residues
MRGKTMGGKRRSFGLRLKLVVFTTVLAIITYSTSALYLYVLYDWWFASFNKSVFTIVVLLLGIFWSGVLAYVAAGWITKP
LQHLEEAATKAASGHIEEDVPLPSSNDEIRSLAVAFNHMLHHLRIVITNIEENTARTNEKTSEMSQASETAANRARDIAA
TIDDISKGATASAEAIQEAAEAAEDVLAIAIRVQETAERAEQSVHEMAETLKTSQDITHSLINGIGQLADDQELSRAAVK
QLERHAHQIGNITLLVADMAEQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESATAVKQIAELVNNIQNEVARVA
MQMDKQAATANAEAVRGKQTNEAIAAMVSSAGEVIRAVHDIAELAKSQMRHMERVAAQTQEVAAIAEQTSAGALEVAAAT
EAQTEAVSNVHKLANELVEQAEQLQAAVARFRAD
>Mature_434_residues
MRGKTMGGKRRSFGLRLKLVVFTTVLAIITYSTSALYLYVLYDWWFASFNKSVFTIVVLLLGIFWSGVLAYVAAGWITKP
LQHLEEAATKAASGHIEEDVPLPSSNDEIRSLAVAFNHMLHHLRIVITNIEENTARTNEKTSEMSQASETAANRARDIAA
TIDDISKGATASAEAIQEAAEAAEDVLAIAIRVQETAERAEQSVHEMAETLKTSQDITHSLINGIGQLADDQELSRAAVK
QLERHAHQIGNITLLVADMAEQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESATAVKQIAELVNNIQNEVARVA
MQMDKQAATANAEAVRGKQTNEAIAAMVSSAGEVIRAVHDIAELAKSQMRHMERVAAQTQEVAAIAEQTSAGALEVAAAT
EAQTEAVSNVHKLANELVEQAEQLQAAVARFRAD

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=348, Percent_Identity=26.4367816091954, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787690, Length=380, Percent_Identity=27.8947368421053, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788194, Length=293, Percent_Identity=29.6928327645051, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788195, Length=284, Percent_Identity=28.169014084507, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1789453, Length=396, Percent_Identity=26.010101010101, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 46820; Mature: 46820

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGKTMGGKRRSFGLRLKLVVFTTVLAIITYSTSALYLYVLYDWWFASFNKSVFTIVVLL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LGIFWSGVLAYVAAGWITKPLQHLEEAATKAASGHIEEDVPLPSSNDEIRSLAVAFNHML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HHLRIVITNIEENTARTNEKTSEMSQASETAANRARDIAATIDDISKGATASAEAIQEAA
HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAAEDVLAIAIRVQETAERAEQSVHEMAETLKTSQDITHSLINGIGQLADDQELSRAAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QLERHAHQIGNITLLVADMAEQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESAT
HHHHHHHHHCCEEEEEEHHHHCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AVKQIAELVNNIQNEVARVAMQMDKQAATANAEAVRGKQTNEAIAAMVSSAGEVIRAVHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
IAELAKSQMRHMERVAAQTQEVAAIAEQTSAGALEVAAATEAQTEAVSNVHKLANELVEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQLQAAVARFRAD
HHHHHHHHHHHCCC
>Mature Secondary Structure
MRGKTMGGKRRSFGLRLKLVVFTTVLAIITYSTSALYLYVLYDWWFASFNKSVFTIVVLL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LGIFWSGVLAYVAAGWITKPLQHLEEAATKAASGHIEEDVPLPSSNDEIRSLAVAFNHML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HHLRIVITNIEENTARTNEKTSEMSQASETAANRARDIAATIDDISKGATASAEAIQEAA
HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
EAAEDVLAIAIRVQETAERAEQSVHEMAETLKTSQDITHSLINGIGQLADDQELSRAAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QLERHAHQIGNITLLVADMAEQTNLLALNASIEAARAGEHGRGFAVVAEEVRKLADESAT
HHHHHHHHHCCEEEEEEHHHHCCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AVKQIAELVNNIQNEVARVAMQMDKQAATANAEAVRGKQTNEAIAAMVSSAGEVIRAVHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
IAELAKSQMRHMERVAAQTQEVAAIAEQTSAGALEVAAATEAQTEAVSNVHKLANELVEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQLQAAVARFRAD
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA