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The map label for this gene is dppB [H]

Identifier: 138896916

GI number: 138896916

Start: 3394221

End: 3395084

Strand: Reverse

Name: dppB [H]

Synonym: GTNG_3285

Alternate gene names: 138896916

Gene position: 3395084-3394221 (Counterclockwise)

Preceding gene: 138896917

Following gene: 138896915

Centisome position: 95.63

GC content: 51.97

Gene sequence:

>864_bases
ATGTACATTGCTCCAGGAGATCCGGCAGCGATCATCGCCGGCCCGACCGCGTCGCAAGCAGACATCGACGCTATCCGCGA
AGATTTAGGGCTCAATGACCCGTTTCTCGTTCAGTATGGCCGTTACATGAACGGACTGCTTCATGGTGATCTTGGGTACT
CATATCAGACAAAACAGCCGGTGTGGGACGCGATCGCAACGAGGTTTCCGAACACGCTGAAACTCGCTATCGCCAGCATT
ATTGTCGCCGTGATCATCGGCGTGGTTGCCGGCATTATTTCGGCCATCCGGCAAAATTCATGGTTTGACGTTTCTAGCAC
CATTTTTGCCTTGGCGGGCATTTCAATCCCAAACTTTTGGCTAGGCACTGTGCTCATTTTAATTTTTGCTGTCAACTTGC
AGCTGCTGCCAGTCGGCGGATTGGATGCACCTTTTTACACGGCAGAAGGATTGAAGCAACTTGTGCTGCCGGCCATTACG
CTTGGGACCGGATCGGCAGCGATGATTGCGAGAATGAGCCGTTCGTCGATGCTTGAGGTTATTCGGGCCGACTTCATCCG
GACGGCACGGGCGAAAGGGGTGCGGGAGCGGACAGTTATTTGGGTGCATGCCTTACGCAATGCGATGATCCCGGTCATTA
CCGTCATCGGCTTGAACTTTGGTTTTTTGCTGGGCGGAACGATCATTACTGAGCAAGTTTTCGCCATTAACGGCGTCGGC
CGCTTGATGGTACAAGCTATCGCTGCTAGGGATTTCCCGATGGTGCAAGGTTCCGTCCTGCTTGTCGCTACATTGTTTGT
GTTAGTCAACTTGATTGTTGACATCATCTATACGTTTATTGATCCGCGCATCAGCTACGATTAA

Upstream 100 bases:

>100_bases
CAACAGAAAAGGGGTGAATAGGATGATAGGGGTGGTTGTCAGAAGATTTTTTCAGCTGATTTTGCTGCTAATCGGTATCT
CGTTTCTTGTGTTTACGAGC

Downstream 100 bases:

>100_bases
ACCAAGGATAGAGAGGGGGAAACCGATGGAAACCGGTGCAGCGGTGAATACAGGACATACGACGGCCGGCCTTGGGCGTA
AAAAGGAAAAAATGTATGTC

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MYIAPGDPAAIIAGPTASQADIDAIREDLGLNDPFLVQYGRYMNGLLHGDLGYSYQTKQPVWDAIATRFPNTLKLAIASI
IVAVIIGVVAGIISAIRQNSWFDVSSTIFALAGISIPNFWLGTVLILIFAVNLQLLPVGGLDAPFYTAEGLKQLVLPAIT
LGTGSAAMIARMSRSSMLEVIRADFIRTARAKGVRERTVIWVHALRNAMIPVITVIGLNFGFLLGGTIITEQVFAINGVG
RLMVQAIAARDFPMVQGSVLLVATLFVLVNLIVDIIYTFIDPRISYD

Sequences:

>Translated_287_residues
MYIAPGDPAAIIAGPTASQADIDAIREDLGLNDPFLVQYGRYMNGLLHGDLGYSYQTKQPVWDAIATRFPNTLKLAIASI
IVAVIIGVVAGIISAIRQNSWFDVSSTIFALAGISIPNFWLGTVLILIFAVNLQLLPVGGLDAPFYTAEGLKQLVLPAIT
LGTGSAAMIARMSRSSMLEVIRADFIRTARAKGVRERTVIWVHALRNAMIPVITVIGLNFGFLLGGTIITEQVFAINGVG
RLMVQAIAARDFPMVQGSVLLVATLFVLVNLIVDIIYTFIDPRISYD
>Mature_287_residues
MYIAPGDPAAIIAGPTASQADIDAIREDLGLNDPFLVQYGRYMNGLLHGDLGYSYQTKQPVWDAIATRFPNTLKLAIASI
IVAVIIGVVAGIISAIRQNSWFDVSSTIFALAGISIPNFWLGTVLILIFAVNLQLLPVGGLDAPFYTAEGLKQLVLPAIT
LGTGSAAMIARMSRSSMLEVIRADFIRTARAKGVRERTVIWVHALRNAMIPVITVIGLNFGFLLGGTIITEQVFAINGVG
RLMVQAIAARDFPMVQGSVLLVATLFVLVNLIVDIIYTFIDPRISYD

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=286, Percent_Identity=46.1538461538462, Blast_Score=262, Evalue=2e-71,
Organism=Escherichia coli, GI1789965, Length=311, Percent_Identity=42.7652733118971, Blast_Score=251, Evalue=4e-68,
Organism=Escherichia coli, GI1787761, Length=306, Percent_Identity=44.1176470588235, Blast_Score=204, Evalue=6e-54,
Organism=Escherichia coli, GI1787497, Length=288, Percent_Identity=39.2361111111111, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1789888, Length=282, Percent_Identity=37.2340425531915, Blast_Score=184, Evalue=5e-48,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=31.3207547169811, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788504, Length=277, Percent_Identity=29.9638989169675, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30961; Mature: 30961

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIAPGDPAAIIAGPTASQADIDAIREDLGLNDPFLVQYGRYMNGLLHGDLGYSYQTKQP
CCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCH
VWDAIATRFPNTLKLAIASIIVAVIIGVVAGIISAIRQNSWFDVSSTIFALAGISIPNFW
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHH
LGTVLILIFAVNLQLLPVGGLDAPFYTAEGLKQLVLPAITLGTGSAAMIARMSRSSMLEV
HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
IRADFIRTARAKGVRERTVIWVHALRNAMIPVITVIGLNFGFLLGGTIITEQVFAINGVG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLMVQAIAARDFPMVQGSVLLVATLFVLVNLIVDIIYTFIDPRISYD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYIAPGDPAAIIAGPTASQADIDAIREDLGLNDPFLVQYGRYMNGLLHGDLGYSYQTKQP
CCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCH
VWDAIATRFPNTLKLAIASIIVAVIIGVVAGIISAIRQNSWFDVSSTIFALAGISIPNFW
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHH
LGTVLILIFAVNLQLLPVGGLDAPFYTAEGLKQLVLPAITLGTGSAAMIARMSRSSMLEV
HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
IRADFIRTARAKGVRERTVIWVHALRNAMIPVITVIGLNFGFLLGGTIITEQVFAINGVG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLMVQAIAARDFPMVQGSVLLVATLFVLVNLIVDIIYTFIDPRISYD
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]