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The map label for this gene is dppC [H]

Identifier: 138896915

GI number: 138896915

Start: 3393290

End: 3394195

Strand: Reverse

Name: dppC [H]

Synonym: GTNG_3284

Alternate gene names: 138896915

Gene position: 3394195-3393290 (Counterclockwise)

Preceding gene: 138896916

Following gene: 138896914

Centisome position: 95.6

GC content: 53.2

Gene sequence:

>906_bases
ATGGAAACCGGTGCAGCGGTGAATACAGGACATACGACGGCCGGCCTTGGGCGTAAAAAGGAAAAAATGTATGTCACCAC
GATCAAACGGCTGCTGAAAAACCGATTAGCGGTCGTAGGACTTATCATTATCGCCATTCAAGTGCTGATGGCCATCTTCG
CACCGTGGTTGGCTACTCATGACCCGGTGAAGCAAAACTTGGCAGCTGCCGAGCTCCCCGCTTTCTCTGACGGCCACTGG
CTTGGGACTGATAACTACGGGCGGGACATTTGGAGCCGCATCGTATATGGTGCTCGCATTTCTCTCGTGGTTGGCATCGT
TTCTGTCAGCTTAGGGCTGATCGGCGGGGTGGCGCTCGGTTTGTTGGCGGGGTATTACAAAAAGCTTGATGGACTGATCA
TGCGGATTGTCGATTTACTGTTTGCGTTTCCGGGGATTTTGCTTGCGATGCTCATCATCGCGATTTTAGGCACAGGTCTA
ATCAATGTAGCGATCGCTATTAGCATTTGGTCGATCCCGACATGCGCCCGCATCGTCCGTGGCAGTGTCCTGTCAGTGAA
AAAACGCGAGTACATTTTGGCGATGAAAGCGCTCGGAGCCAGCAATGCCCGCATCATCATCAAGCATATTTTGCCGAACT
GCCTAGCGCCGATTATCGTCTTTGCAACGATGCGCATGGCAACCGCCATTTTGTCGACTGCCTCGCTCAGCTATTTAGGG
TTAGGCGCCCAGCCGCCGACGCCGGAGTGGGGGGCGATGATCGCCGCCGGACAGGCGTTTATGTGGACATCGCCGCACAT
GACGATTGTTCCTGGTATCGCCATTATGCTTGTCGTCTTTGCTTTTAACGTCGTTGGCGACGGGCTACGCGATGCGCTTG
ACCCAAATATGGATATCAATCAATAA

Upstream 100 bases:

>100_bases
ACATTGTTTGTGTTAGTCAACTTGATTGTTGACATCATCTATACGTTTATTGATCCGCGCATCAGCTACGATTAAACCAA
GGATAGAGAGGGGGAAACCG

Downstream 100 bases:

>100_bases
ACATACCATTTGGAGGGAAAGCGATTGAAAAAGAAGTATTGGTCTTACCTGTTGTCTGCTCTCGTACTCGCTGTTTCTAC
GGCATTGGCCGGATGCGGCG

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
METGAAVNTGHTTAGLGRKKEKMYVTTIKRLLKNRLAVVGLIIIAIQVLMAIFAPWLATHDPVKQNLAAAELPAFSDGHW
LGTDNYGRDIWSRIVYGARISLVVGIVSVSLGLIGGVALGLLAGYYKKLDGLIMRIVDLLFAFPGILLAMLIIAILGTGL
INVAIAISIWSIPTCARIVRGSVLSVKKREYILAMKALGASNARIIIKHILPNCLAPIIVFATMRMATAILSTASLSYLG
LGAQPPTPEWGAMIAAGQAFMWTSPHMTIVPGIAIMLVVFAFNVVGDGLRDALDPNMDINQ

Sequences:

>Translated_301_residues
METGAAVNTGHTTAGLGRKKEKMYVTTIKRLLKNRLAVVGLIIIAIQVLMAIFAPWLATHDPVKQNLAAAELPAFSDGHW
LGTDNYGRDIWSRIVYGARISLVVGIVSVSLGLIGGVALGLLAGYYKKLDGLIMRIVDLLFAFPGILLAMLIIAILGTGL
INVAIAISIWSIPTCARIVRGSVLSVKKREYILAMKALGASNARIIIKHILPNCLAPIIVFATMRMATAILSTASLSYLG
LGAQPPTPEWGAMIAAGQAFMWTSPHMTIVPGIAIMLVVFAFNVVGDGLRDALDPNMDINQ
>Mature_301_residues
METGAAVNTGHTTAGLGRKKEKMYVTTIKRLLKNRLAVVGLIIIAIQVLMAIFAPWLATHDPVKQNLAAAELPAFSDGHW
LGTDNYGRDIWSRIVYGARISLVVGIVSVSLGLIGGVALGLLAGYYKKLDGLIMRIVDLLFAFPGILLAMLIIAILGTGL
INVAIAISIWSIPTCARIVRGSVLSVKKREYILAMKALGASNARIIIKHILPNCLAPIIVFATMRMATAILSTASLSYLG
LGAQPPTPEWGAMIAAGQAFMWTSPHMTIVPGIAIMLVVFAFNVVGDGLRDALDPNMDINQ

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=274, Percent_Identity=48.5401459854015, Blast_Score=261, Evalue=4e-71,
Organism=Escherichia coli, GI1787760, Length=290, Percent_Identity=41.0344827586207, Blast_Score=210, Evalue=9e-56,
Organism=Escherichia coli, GI1789964, Length=271, Percent_Identity=46.4944649446494, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1789889, Length=249, Percent_Identity=38.1526104417671, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=37.2693726937269, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1787549, Length=274, Percent_Identity=32.4817518248175, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788505, Length=222, Percent_Identity=28.8288288288288, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32138; Mature: 32138

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGAAVNTGHTTAGLGRKKEKMYVTTIKRLLKNRLAVVGLIIIAIQVLMAIFAPWLATH
CCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPVKQNLAAAELPAFSDGHWLGTDNYGRDIWSRIVYGARISLVVGIVSVSLGLIGGVALG
CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAGYYKKLDGLIMRIVDLLFAFPGILLAMLIIAILGTGLINVAIAISIWSIPTCARIVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
GSVLSVKKREYILAMKALGASNARIIIKHILPNCLAPIIVFATMRMATAILSTASLSYLG
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGAQPPTPEWGAMIAAGQAFMWTSPHMTIVPGIAIMLVVFAFNVVGDGLRDALDPNMDIN
CCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q
C
>Mature Secondary Structure
METGAAVNTGHTTAGLGRKKEKMYVTTIKRLLKNRLAVVGLIIIAIQVLMAIFAPWLATH
CCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPVKQNLAAAELPAFSDGHWLGTDNYGRDIWSRIVYGARISLVVGIVSVSLGLIGGVALG
CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLAGYYKKLDGLIMRIVDLLFAFPGILLAMLIIAILGTGLINVAIAISIWSIPTCARIVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
GSVLSVKKREYILAMKALGASNARIIIKHILPNCLAPIIVFATMRMATAILSTASLSYLG
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LGAQPPTPEWGAMIAAGQAFMWTSPHMTIVPGIAIMLVVFAFNVVGDGLRDALDPNMDIN
CCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]