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The map label for this gene is ycjN [C]

Identifier: 138896843

GI number: 138896843

Start: 3312828

End: 3314153

Strand: Reverse

Name: ycjN [C]

Synonym: GTNG_3206

Alternate gene names: 138896843

Gene position: 3314153-3312828 (Counterclockwise)

Preceding gene: 138896845

Following gene: 138896842

Centisome position: 93.35

GC content: 47.81

Gene sequence:

>1326_bases
ATGAAAAAGCGCAAGTGGTTTAAGCTCGTTTCGGTGTTACTTGCCGCTGTGGTGATCGGAACGGGCTGCCAAGGACAAGC
AGGAAATGAGCAAGGAGAGGGGAAGCAAAGTTCAACCGTGCAGATTGATTTTTGGGCAGCGCCGAACCCGACGCAACAAG
CGTTCTGGAAGAAGATGGCCGACCGCTATATGGAAGAGCATAAACATGTGAAAATCAAAGTATCGCCGATGCCGGAAAGC
CCTTCTTCGGAGGCGGGCATTCAGTCCGCCATTGCTGCAGGAAACGCACCGGTCCTTTCGGAAAACATCTCGCGTGGTTT
TGCCGCGCAATTGGCGGAAAGCCGGGCGATTGTGCCCATGGATCAATTTGACGGATTTGACGATTTACTTCGCAAGCGGC
AAATGGAAACGACGATTTCCACTTGGAAGTTTGCTGATGGACATCAGTATGTACTGCCGATTTACTCGAACGCCATGCTG
TTTGGTTGGCGAATCGATCTATTGAAAGAGTTAGGATATAACGAGCCACCGAAAACATATAGCGAAGTCCTTGAGGTCGG
CAAAAAGCTAAAAGAAAAATATCCAGACAAGTTTTTGTGGGCGAGAGCCGATTTGGCCAAACCGACATGGTGGGCAAGAT
GGTTTGACTTCTTTATGCTGTATAACGCCGCGTCGAATGGAACTCATTTTATTGATGGGAATAAACTGAGCGCGGATCGC
GACGCGGGAGTAAAAACACTTCAATTCTTTGCGGATTTAAGTAAAAATCAACTGGTACTGACGAGGGAGACGAAAGATCC
GTTTGAAAACGGCACGTCGGTGATGGTCGATTTAGGGCCATGGACGTTCCCTTATTGGGCGGAGAAGTTTCCGGAAATGA
AATTTAACGAAACATACGTTTTATCCATGCCGCCGGTGCCGGATGGAATGGATTCAGCACAAGCAAAAACGTTTGCCGAT
ACAAAAGGGCTAGTCATTTACGCTTCGGCGACGAAAGAGCAGCAACAAGCCGCGTTCGATTTCGTCAAATGGGTGTACTC
TGATCCACAAAACGATTTGGAATGGCTGAAAGAGACGAATTTGCCGCCAGCGCGGGATGATTTGTCAACGAACGAGGCGT
TTGTCTCCTATTTTGAGGAAAATCCGCAGTTGAAACTGTATGCGGAAAATATCCCGAATGCGTTGCCGCCGATGGATAAT
GCCCAAATGGTTGAAATTCAAGAATTGATCGGCAAACAAGCGTTGAACCCCGTTGTTAAAGGTGAGAAAACCCCTGAAAA
AGCTTGGAAGGATATGGAGAAAGCGATCGATGGGGTGTTAAAGTAA

Upstream 100 bases:

>100_bases
GCCTTAGTGATCTGTCAGGGAAAGGAGAGACATTGTCCAAATCAATTGTTTGTGTAAGCGTTTTAATCATCTGCTCATTC
ATATAAGGGGGGAATAAACG

Downstream 100 bases:

>100_bases
CATGAATAAGCACACGGCAAAAGTGGGTTGGCTGCTCGCCAGCCCATACCTTATCTATTCCGCTATTTTCTTTTTAATCC
CTTTATTTTGGGCGTTATAT

Product: sugar ABC transporter periplasmic protein

Products: NA

Alternate protein names: Sugar ABC Transporter Periplasmic Protein; ABC-Type Sugar Transport System Periplasmic Component

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKKRKWFKLVSVLLAAVVIGTGCQGQAGNEQGEGKQSSTVQIDFWAAPNPTQQAFWKKMADRYMEEHKHVKIKVSPMPES
PSSEAGIQSAIAAGNAPVLSENISRGFAAQLAESRAIVPMDQFDGFDDLLRKRQMETTISTWKFADGHQYVLPIYSNAML
FGWRIDLLKELGYNEPPKTYSEVLEVGKKLKEKYPDKFLWARADLAKPTWWARWFDFFMLYNAASNGTHFIDGNKLSADR
DAGVKTLQFFADLSKNQLVLTRETKDPFENGTSVMVDLGPWTFPYWAEKFPEMKFNETYVLSMPPVPDGMDSAQAKTFAD
TKGLVIYASATKEQQQAAFDFVKWVYSDPQNDLEWLKETNLPPARDDLSTNEAFVSYFEENPQLKLYAENIPNALPPMDN
AQMVEIQELIGKQALNPVVKGEKTPEKAWKDMEKAIDGVLK

Sequences:

>Translated_441_residues
MKKRKWFKLVSVLLAAVVIGTGCQGQAGNEQGEGKQSSTVQIDFWAAPNPTQQAFWKKMADRYMEEHKHVKIKVSPMPES
PSSEAGIQSAIAAGNAPVLSENISRGFAAQLAESRAIVPMDQFDGFDDLLRKRQMETTISTWKFADGHQYVLPIYSNAML
FGWRIDLLKELGYNEPPKTYSEVLEVGKKLKEKYPDKFLWARADLAKPTWWARWFDFFMLYNAASNGTHFIDGNKLSADR
DAGVKTLQFFADLSKNQLVLTRETKDPFENGTSVMVDLGPWTFPYWAEKFPEMKFNETYVLSMPPVPDGMDSAQAKTFAD
TKGLVIYASATKEQQQAAFDFVKWVYSDPQNDLEWLKETNLPPARDDLSTNEAFVSYFEENPQLKLYAENIPNALPPMDN
AQMVEIQELIGKQALNPVVKGEKTPEKAWKDMEKAIDGVLK
>Mature_441_residues
MKKRKWFKLVSVLLAAVVIGTGCQGQAGNEQGEGKQSSTVQIDFWAAPNPTQQAFWKKMADRYMEEHKHVKIKVSPMPES
PSSEAGIQSAIAAGNAPVLSENISRGFAAQLAESRAIVPMDQFDGFDDLLRKRQMETTISTWKFADGHQYVLPIYSNAML
FGWRIDLLKELGYNEPPKTYSEVLEVGKKLKEKYPDKFLWARADLAKPTWWARWFDFFMLYNAASNGTHFIDGNKLSADR
DAGVKTLQFFADLSKNQLVLTRETKDPFENGTSVMVDLGPWTFPYWAEKFPEMKFNETYVLSMPPVPDGMDSAQAKTFAD
TKGLVIYASATKEQQQAAFDFVKWVYSDPQNDLEWLKETNLPPARDDLSTNEAFVSYFEENPQLKLYAENIPNALPPMDN
AQMVEIQELIGKQALNPVVKGEKTPEKAWKDMEKAIDGVLK

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. [C]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49932; Mature: 49932

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRKWFKLVSVLLAAVVIGTGCQGQAGNEQGEGKQSSTVQIDFWAAPNPTQQAFWKKMA
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
DRYMEEHKHVKIKVSPMPESPSSEAGIQSAIAAGNAPVLSENISRGFAAQLAESRAIVPM
HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCH
DQFDGFDDLLRKRQMETTISTWKFADGHQYVLPIYSNAMLFGWRIDLLKELGYNEPPKTY
HHCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCHHH
SEVLEVGKKLKEKYPDKFLWARADLAKPTWWARWFDFFMLYNAASNGTHFIDGNKLSADR
HHHHHHHHHHHHHCCCHHEEEHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
DAGVKTLQFFADLSKNQLVLTRETKDPFENGTSVMVDLGPWTFPYWAEKFPEMKFNETYV
CCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEE
LSMPPVPDGMDSAQAKTFADTKGLVIYASATKEQQQAAFDFVKWVYSDPQNDLEWLKETN
EECCCCCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
LPPARDDLSTNEAFVSYFEENPQLKLYAENIPNALPPMDNAQMVEIQELIGKQALNPVVK
CCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHC
GEKTPEKAWKDMEKAIDGVLK
CCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKRKWFKLVSVLLAAVVIGTGCQGQAGNEQGEGKQSSTVQIDFWAAPNPTQQAFWKKMA
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
DRYMEEHKHVKIKVSPMPESPSSEAGIQSAIAAGNAPVLSENISRGFAAQLAESRAIVPM
HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCH
DQFDGFDDLLRKRQMETTISTWKFADGHQYVLPIYSNAMLFGWRIDLLKELGYNEPPKTY
HHCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCHHH
SEVLEVGKKLKEKYPDKFLWARADLAKPTWWARWFDFFMLYNAASNGTHFIDGNKLSADR
HHHHHHHHHHHHHCCCHHEEEHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
DAGVKTLQFFADLSKNQLVLTRETKDPFENGTSVMVDLGPWTFPYWAEKFPEMKFNETYV
CCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEE
LSMPPVPDGMDSAQAKTFADTKGLVIYASATKEQQQAAFDFVKWVYSDPQNDLEWLKETN
EECCCCCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
LPPARDDLSTNEAFVSYFEENPQLKLYAENIPNALPPMDNAQMVEIQELIGKQALNPVVK
CCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHC
GEKTPEKAWKDMEKAIDGVLK
CCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA