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The map label for this gene is araQ [H]

Identifier: 138896841

GI number: 138896841

Start: 3311131

End: 3311961

Strand: Reverse

Name: araQ [H]

Synonym: GTNG_3204

Alternate gene names: 138896841

Gene position: 3311961-3311131 (Counterclockwise)

Preceding gene: 138896842

Following gene: 138896840

Centisome position: 93.29

GC content: 45.97

Gene sequence:

>831_bases
ATGGTTGGGAGTAAACGATGGAAGGTTGGCTTGCTTTATGTGCTGGCGTTTGCGGTTTTGTTCGTCATGGTTTTCCCGTA
TTTGTATATGGTGTTAGGCTCGCTTGCTCCATGGGATGAAGTCGATCGAAAGTTGATTCCGTCGTCATTGACATTGCGCT
CGTATGAATGGCTGTTTCAAGGCGGTGAAGATGTCGTGCCGCGGCCGTGGCTTCGGGCGTTTTTCAACAGTTTGCTCGTC
ACATCGGCATCAACGCTTCTTATGCTGGTGACGGCGGTGATGGTCGGATATGCATTGTCGAAAATGACCTTTAAGGGGAG
ACAATGGGTCAATAACGCGATTTTGTTTCAAATGTTTTATCCGTCGATCATTTTGTTGATTCCGCTGTTTTTGATCGTCC
GGTATTTCGGCTGGTACAACACGTATTGGGCGATGATCTTGCCGAAGGCCGTCAACTTGTGGGCGATTTTTATGTATACG
AACTTTTTCCGTAGCATTCCTGATGAATTGATCGAAGCGGCCAAGATGGATGGGGCAGGGCATCTCACCATCATTCGCCG
CATTATCTGGCCGATGTCGCGCTCGATCACAACGATTATTTTCTTGTTCCTTTTCATGGAACGATGGGTGGAACTTCTTT
GGGATATGCTGGTCGTCAATAACGAAAAGATGTTGACATTAAATGTATTGTTGGCGCAAATGTTTGGGCCGTATGGGGGG
TATCCGGGGCCAATGTATGCCGCCTCAGTGTTACTCACGCTGCCGATTTTGATTTTGTTCATTTTGTTTAGCAAGAATTT
TAAAGAAGGTATGCAGTTCATATTAAAATAA

Upstream 100 bases:

>100_bases
AACGCAGGTTACGGAACGGCGGTCGCGATCATCAATTCGATCGTCACCTTTGCGTCGATTTTCATCTTTCGCAAGCTGTT
GGAAAAATGGGGTGGCAGAC

Downstream 100 bases:

>100_bases
TGAAACATCACGATGGAAAAGAGAGCAGGGAGAGACGTTATGCAGACGAGGATGCCGACAATGAAAACATGCAAAACATT
GCTTGAGGAGCTCGCGCGTG

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MVGSKRWKVGLLYVLAFAVLFVMVFPYLYMVLGSLAPWDEVDRKLIPSSLTLRSYEWLFQGGEDVVPRPWLRAFFNSLLV
TSASTLLMLVTAVMVGYALSKMTFKGRQWVNNAILFQMFYPSIILLIPLFLIVRYFGWYNTYWAMILPKAVNLWAIFMYT
NFFRSIPDELIEAAKMDGAGHLTIIRRIIWPMSRSITTIIFLFLFMERWVELLWDMLVVNNEKMLTLNVLLAQMFGPYGG
YPGPMYAASVLLTLPILILFILFSKNFKEGMQFILK

Sequences:

>Translated_276_residues
MVGSKRWKVGLLYVLAFAVLFVMVFPYLYMVLGSLAPWDEVDRKLIPSSLTLRSYEWLFQGGEDVVPRPWLRAFFNSLLV
TSASTLLMLVTAVMVGYALSKMTFKGRQWVNNAILFQMFYPSIILLIPLFLIVRYFGWYNTYWAMILPKAVNLWAIFMYT
NFFRSIPDELIEAAKMDGAGHLTIIRRIIWPMSRSITTIIFLFLFMERWVELLWDMLVVNNEKMLTLNVLLAQMFGPYGG
YPGPMYAASVLLTLPILILFILFSKNFKEGMQFILK
>Mature_276_residues
MVGSKRWKVGLLYVLAFAVLFVMVFPYLYMVLGSLAPWDEVDRKLIPSSLTLRSYEWLFQGGEDVVPRPWLRAFFNSLLV
TSASTLLMLVTAVMVGYALSKMTFKGRQWVNNAILFQMFYPSIILLIPLFLIVRYFGWYNTYWAMILPKAVNLWAIFMYT
NFFRSIPDELIEAAKMDGAGHLTIIRRIIWPMSRSITTIIFLFLFMERWVELLWDMLVVNNEKMLTLNVLLAQMFGPYGG
YPGPMYAASVLLTLPILILFILFSKNFKEGMQFILK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=279, Percent_Identity=31.1827956989247, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1790464, Length=294, Percent_Identity=26.530612244898, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789860, Length=230, Percent_Identity=22.1739130434783, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32078; Mature: 32078

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MVGSKRWKVGLLYVLAFAVLFVMVFPYLYMVLGSLAPWDEVDRKLIPSSLTLRSYEWLFQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHC
GGEDVVPRPWLRAFFNSLLVTSASTLLMLVTAVMVGYALSKMTFKGRQWVNNAILFQMFY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PSIILLIPLFLIVRYFGWYNTYWAMILPKAVNLWAIFMYTNFFRSIPDELIEAAKMDGAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HLTIIRRIIWPMSRSITTIIFLFLFMERWVELLWDMLVVNNEKMLTLNVLLAQMFGPYGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
YPGPMYAASVLLTLPILILFILFSKNFKEGMQFILK
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]