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The map label for this gene is rbsD

Identifier: 138896810

GI number: 138896810

Start: 3275743

End: 3276141

Strand: Reverse

Name: rbsD

Synonym: GTNG_3173

Alternate gene names: 138896810

Gene position: 3276141-3275743 (Counterclockwise)

Preceding gene: 138896811

Following gene: 138896809

Centisome position: 92.28

GC content: 41.35

Gene sequence:

>399_bases
ATGAAAAAGAATGGGATCTTGAATAAAGAATTGAACACATTGCTTGCTTCGCTAGGGCATACCGATACGATCGTGATTGC
CGATTGTGGGCTGCCGATTCCAAACGAAGAGGCTCGTATTGACTTAGCACTTGTCAAAGGATTTCCGCCCTTTTTATCCG
TTTTGGATGCGGTAATTAATGAGTTGGTAGTCGAAGAGATTGTACTAGCTGAGGAAATCAAAACCCAAAATCCAGACGTG
TATGAAAGCATCAAAGCAAGAATGAGTGATGTGCCTATTCAATTTGTTCGACATGAAGAATTTAAGGAAATGACAAAACA
GGCGAAAGCAGTGATTCGTACAGGGGAGGCAACTCCTTATGCCAATATCATTCTTCGTTCTGGTGTGAACTTTTCATAG

Upstream 100 bases:

>100_bases
CGGCCGCAGCGCTATCGGTCACCAAGCTCGGAGCGCAGGCTGGGATGCCGACACGAGAGGATGTGGAATCATTTTTAGCT
AAACAGAAAGGGAATCAAGG

Downstream 100 bases:

>100_bases
GAAAATGTCTGAAAGAAAAGGAGGGCAGAATCGATGAAGCCCTTGATTGACATGCGGTCAATTCAAAAATCATTTGGTTC
CCATACCGTTCTCAACGGCG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKKNGILNKELNTLLASLGHTDTIVIADCGLPIPNEEARIDLALVKGFPPFLSVLDAVINELVVEEIVLAEEIKTQNPDV
YESIKARMSDVPIQFVRHEEFKEMTKQAKAVIRTGEATPYANIILRSGVNFS

Sequences:

>Translated_132_residues
MKKNGILNKELNTLLASLGHTDTIVIADCGLPIPNEEARIDLALVKGFPPFLSVLDAVINELVVEEIVLAEEIKTQNPDV
YESIKARMSDVPIQFVRHEEFKEMTKQAKAVIRTGEATPYANIILRSGVNFS
>Mature_132_residues
MKKNGILNKELNTLLASLGHTDTIVIADCGLPIPNEEARIDLALVKGFPPFLSVLDAVINELVVEEIVLAEEIKTQNPDV
YESIKARMSDVPIQFVRHEEFKEMTKQAKAVIRTGEATPYANIILRSGVNFS

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.0431654676259, Blast_Score=143, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_GEOTN (A4IT64)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001127263.1
- ProteinModelPortal:   A4IT64
- SMR:   A4IT64
- STRING:   A4IT64
- GeneID:   4968099
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_3173
- NMPDR:   fig|420246.5.peg.3036
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   A4IT64
- ProtClustDB:   PRK11797
- BioCyc:   GTHE420246:GTNG_3173-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14618; Mature: 14618

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 98-98

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNGILNKELNTLLASLGHTDTIVIADCGLPIPNEEARIDLALVKGFPPFLSVLDAVIN
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHH
ELVVEEIVLAEEIKTQNPDVYESIKARMSDVPIQFVRHEEFKEMTKQAKAVIRTGEATPY
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANIILRSGVNFS
HHHHHHCCCCCC
>Mature Secondary Structure
MKKNGILNKELNTLLASLGHTDTIVIADCGLPIPNEEARIDLALVKGFPPFLSVLDAVIN
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHH
ELVVEEIVLAEEIKTQNPDVYESIKARMSDVPIQFVRHEEFKEMTKQAKAVIRTGEATPY
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANIILRSGVNFS
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA