Click here to switch to the map view.

The map label for this gene is whiA [H]

Identifier: 138896650

GI number: 138896650

Start: 3110342

End: 3111304

Strand: Reverse

Name: whiA [H]

Synonym: GTNG_3013

Alternate gene names: 138896650

Gene position: 3111304-3110342 (Counterclockwise)

Preceding gene: 138896651

Following gene: 138896649

Centisome position: 87.63

GC content: 47.87

Gene sequence:

>963_bases
GTGTCTTTTGCGTCAGAAACGAAAAAAGAACTCACCAATCTAGAAGTGAAGCACTGTTGTCTGCGGGCGGAACTGTCGGC
GCTGTTGCGTATGAACGGTTCGCTGTCGTTTTCCGGCGGGCGGATGACGGTCGATGTTCAGACAGAAAACGCGGCGATTG
CCCGGCGTATTTATATGTTGCTCCGAAAAGGGTATGATGTCGCCGTTGAGCTGTTTGTCCGCAAAAAGATGCGTTTAAAG
AAAAATAACGTTTATATCGTCCGCATTACTGACGGTGCGGCCTCATTGCTTCGGGAGCTTTATATTTGGAACGGTGATTT
TTCGTTCGTTCACGATATTTCTCCGGAGCTCATCAAGAAAAAGTGCTGTAAGCGTTCGTATTTGCGAGGCGCATTTTTGG
CGGGCGGTTCGGTCAACAACCCGGAGACATCCTCGTACCATTTAGAGATTTTTTCTTTGTATGAGGAACATAATCGGTCG
TTATGTGAATTAATGAACAGTCACTTTTTTTTAAATGCCAAAACGTTGGAACGGAAAAAGGGGTTTATTACGTATTTAAA
AGAGGCGGAAAAAATCGCGGAGTTTTTAAACATTATCGGCGCCCACCAAGCGCTGCTTCGCTTTGAAGATATTCGCATCG
TCCGCGATATGCGCAACTCGGTCAATCGGCTCGTCAACTGTGAAACGGCCAATTTGAACAAAACGATCGGCGCCGCGCTC
CGCCAAGTGGAAAACATCCGCTACATCGATGAAACGATCGGCCTTGATTCACTGCCGGCGAAACTGCGGGAAATTGCCAA
ACTCCGCATCGAGCATCAAGATGTCACCTTAAAGGAACTTGGTGAGATGGTCGCGGGTGGAAAAATCAGCAAATCCGGCA
TCAACCACCGCCTGCGCAAAATTGACGAAATTGCTGAACGGCTGAGAGCCGGAAAGCCGGTCGATTTCCATAAATCGCTG
TAA

Upstream 100 bases:

>100_bases
TTGTGATGAAGCACCGGAGTGAGGAGGCGACAGATGGCCGCGCCGAGGTTCAGACACCTCCAACCGGCCGATGCGGGGAA
CGAATGGAGGTGAAGCGATC

Downstream 100 bases:

>100_bases
GGGGGAGATGGAGAATGGTCGAAAAACAAGTTGAAGTGAAACTAAAAACCGGACTGCAAGCGCGCCCGGCGGCGTTGTTC
GTCCAAGAGGCGAACCGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSFASETKKELTNLEVKHCCLRAELSALLRMNGSLSFSGGRMTVDVQTENAAIARRIYMLLRKGYDVAVELFVRKKMRLK
KNNVYIVRITDGAASLLRELYIWNGDFSFVHDISPELIKKKCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYEEHNRS
LCELMNSHFFLNAKTLERKKGFITYLKEAEKIAEFLNIIGAHQALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAAL
RQVENIRYIDETIGLDSLPAKLREIAKLRIEHQDVTLKELGEMVAGGKISKSGINHRLRKIDEIAERLRAGKPVDFHKSL

Sequences:

>Translated_320_residues
MSFASETKKELTNLEVKHCCLRAELSALLRMNGSLSFSGGRMTVDVQTENAAIARRIYMLLRKGYDVAVELFVRKKMRLK
KNNVYIVRITDGAASLLRELYIWNGDFSFVHDISPELIKKKCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYEEHNRS
LCELMNSHFFLNAKTLERKKGFITYLKEAEKIAEFLNIIGAHQALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAAL
RQVENIRYIDETIGLDSLPAKLREIAKLRIEHQDVTLKELGEMVAGGKISKSGINHRLRKIDEIAERLRAGKPVDFHKSL
>Mature_319_residues
SFASETKKELTNLEVKHCCLRAELSALLRMNGSLSFSGGRMTVDVQTENAAIARRIYMLLRKGYDVAVELFVRKKMRLKK
NNVYIVRITDGAASLLRELYIWNGDFSFVHDISPELIKKKCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYEEHNRSL
CELMNSHFFLNAKTLERKKGFITYLKEAEKIAEFLNIIGAHQALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAALR
QVENIRYIDETIGLDSLPAKLREIAKLRIEHQDVTLKELGEMVAGGKISKSGINHRLRKIDEIAERLRAGKPVDFHKSL

Specific function: May be required for sporulation [H]

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478 [H]

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N [H]

EC number: NA

Molecular weight: Translated: 36564; Mature: 36433

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFASETKKELTNLEVKHCCLRAELSALLRMNGSLSFSGGRMTVDVQTENAAIARRIYML
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCHHHHHHHHHH
LRKGYDVAVELFVRKKMRLKKNNVYIVRITDGAASLLRELYIWNGDFSFVHDISPELIKK
HHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHCCCHHHHHH
KCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYEEHNRSLCELMNSHFFLNAKTLERKK
HHHHHHHHCHHEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCEEEEHHHHHHHH
GFITYLKEAEKIAEFLNIIGAHQALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RQVENIRYIDETIGLDSLPAKLREIAKLRIEHQDVTLKELGEMVAGGKISKSGINHRLRK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
IDEIAERLRAGKPVDFHKSL
HHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
SFASETKKELTNLEVKHCCLRAELSALLRMNGSLSFSGGRMTVDVQTENAAIARRIYML
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCHHHHHHHHHH
LRKGYDVAVELFVRKKMRLKKNNVYIVRITDGAASLLRELYIWNGDFSFVHDISPELIKK
HHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHCCCHHHHHH
KCCKRSYLRGAFLAGGSVNNPETSSYHLEIFSLYEEHNRSLCELMNSHFFLNAKTLERKK
HHHHHHHHCHHEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCEEEEHHHHHHHH
GFITYLKEAEKIAEFLNIIGAHQALLRFEDIRIVRDMRNSVNRLVNCETANLNKTIGAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
RQVENIRYIDETIGLDSLPAKLREIAKLRIEHQDVTLKELGEMVAGGKISKSGINHRLRK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH
IDEIAERLRAGKPVDFHKSL
HHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA