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The map label for this gene is sufB [H]

Identifier: 138896579

GI number: 138896579

Start: 3042774

End: 3044171

Strand: Reverse

Name: sufB [H]

Synonym: GTNG_2942

Alternate gene names: 138896579

Gene position: 3044171-3042774 (Counterclockwise)

Preceding gene: 138896580

Following gene: 138896578

Centisome position: 85.74

GC content: 51.22

Gene sequence:

>1398_bases
ATGGCGAAAAAAGCACCAGAAATCGGCGAATATAAGTATGGCTTCGTCGATAAGGACGTTTCCATCTTCCGCGCCCAGCG
CGGGCTGACGCGCGAAGTCGTCGAAGAAATTTCGCGCATGAAAAACGAGCCGCAATGGATGCTCGAGTTTCGCTTAAAAG
CGCTCGACATTTTCTACAGCAAACCGATGCCGCAATGGGGCGGCGACTTGTCGAGCCTGGACTTTGATGAGATCACGTAC
TACGTCAAACCGACGGAAAAATCGGGCCGTTCGTGGGACGAAGTGCCGGAGGAAATTAAAGCGACGTTTGATAAGCTCGG
CATTCCAGAGGCGGAACAAAAATATTTGGCCGGGGTTTCGGCGCAATACGAGTCGGAAGTTGTCTACCATAACATGAAAG
AAGACTTGGAAAAACTCGGCGTCATCTTTAAAGACACCGATTCGGCCCTGAAAGAAAACGAAGACTTGTTCCGCGAACAT
TTTGCGAAAGTGGTGCCGCCAACGGACAACAAGTTCGCGGCGTTGAACTCGGCTGTTTGGTCGGGTGGTTCGTTCATTTA
CGTTCCGAAAGGCGTTAAAGTCGAAACGCCGCTGCAAGCGTATTTCCGTATCAACTCGGAAAACATGGGGCAGTTTGAAC
GGACGCTCATCATCGTCGATGAAGGAGCACACGTCCATTACGTTGAGGGCTGTACGGCACCGATTTACACGACGAACTCG
CTCCACAGCGCGGTCGTCGAAATCATCGTCAAAAAAGGCGCGTACTGCCGCTACACGACGATTCAAAACTGGGCGAACAA
CGTCTTCAACTTGGTGACGAAACGCGCCGTTTGCGAAGAAAACGCGACAATGGAATGGATCGATGGCAACATCGGCTCGA
AGCTGACGATGAAGTATCCGGCTGTCATCTTAAAAGGTGAAGGCGCGCGCGGTTTGACGCTGTCGATCGCCATCGCCGGC
AAAGGCCAGCACCAAGATGCTGGGGCGAAAATGATCCATTTGGCGCCGAACACATCGTCCACGATCGTTTCGAAGTCGAT
TTCCAAACAAGGCGGGAAAGTCACGTACCGCGGCATCGTCCATTTCGGCCGCAAAGCGTCCGGTTCGCGTTCGAACATCG
AATGTGACACGCTCATTCTCGACAACCAATCGACATCTGATACGATTCCATATAACGAAATTTTAAACGACAACATTTCG
CTTGAGCACGAAGCGAAAGTGTCGAAAGTGTCGGAAGAGCAGCTGTTCTACTTGATGAGCCGCGGCATTTCTGAACAGGA
AGCGACGGAAATGATCGTTATGGGCTTTATCGAGCCATTCACAAGAGAGCTGCCGATGGAATACGCCGTCGAGATGAACC
GCTTGATCAAGTTTGAAATGGAAGGAAGCATTGGATAA

Upstream 100 bases:

>100_bases
TGTTTCGAAATTTCCGGCCCGCATTAAATGTGCGACATTGGCGTGGAAAGCGCTCGAAAAAGGGTTGCATGACCATTAAG
ATGAAGGAAGGTGAACCACG

Downstream 100 bases:

>100_bases
TCTTGATCATATCAAGGGTGCAGCGTTCAAACGAAGCGCTGCACCCATCATTTTTTTTCAAGTGCCGCTGATCCCACTTC
AGTGTCTCATCCTCAATGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MAKKAPEIGEYKYGFVDKDVSIFRAQRGLTREVVEEISRMKNEPQWMLEFRLKALDIFYSKPMPQWGGDLSSLDFDEITY
YVKPTEKSGRSWDEVPEEIKATFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEKLGVIFKDTDSALKENEDLFREH
FAKVVPPTDNKFAALNSAVWSGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPIYTTNS
LHSAVVEIIVKKGAYCRYTTIQNWANNVFNLVTKRAVCEENATMEWIDGNIGSKLTMKYPAVILKGEGARGLTLSIAIAG
KGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIVHFGRKASGSRSNIECDTLILDNQSTSDTIPYNEILNDNIS
LEHEAKVSKVSEEQLFYLMSRGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG

Sequences:

>Translated_465_residues
MAKKAPEIGEYKYGFVDKDVSIFRAQRGLTREVVEEISRMKNEPQWMLEFRLKALDIFYSKPMPQWGGDLSSLDFDEITY
YVKPTEKSGRSWDEVPEEIKATFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEKLGVIFKDTDSALKENEDLFREH
FAKVVPPTDNKFAALNSAVWSGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPIYTTNS
LHSAVVEIIVKKGAYCRYTTIQNWANNVFNLVTKRAVCEENATMEWIDGNIGSKLTMKYPAVILKGEGARGLTLSIAIAG
KGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIVHFGRKASGSRSNIECDTLILDNQSTSDTIPYNEILNDNIS
LEHEAKVSKVSEEQLFYLMSRGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG
>Mature_464_residues
AKKAPEIGEYKYGFVDKDVSIFRAQRGLTREVVEEISRMKNEPQWMLEFRLKALDIFYSKPMPQWGGDLSSLDFDEITYY
VKPTEKSGRSWDEVPEEIKATFDKLGIPEAEQKYLAGVSAQYESEVVYHNMKEDLEKLGVIFKDTDSALKENEDLFREHF
AKVVPPTDNKFAALNSAVWSGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPIYTTNSL
HSAVVEIIVKKGAYCRYTTIQNWANNVFNLVTKRAVCEENATMEWIDGNIGSKLTMKYPAVILKGEGARGLTLSIAIAGK
GQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIVHFGRKASGSRSNIECDTLILDNQSTSDTIPYNEILNDNISL
EHEAKVSKVSEEQLFYLMSRGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=479, Percent_Identity=40.9185803757829, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=26.6233766233766, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52299; Mature: 52168

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKAPEIGEYKYGFVDKDVSIFRAQRGLTREVVEEISRMKNEPQWMLEFRLKALDIFYS
CCCCCCCCCCEECCEECCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
KPMPQWGGDLSSLDFDEITYYVKPTEKSGRSWDEVPEEIKATFDKLGIPEAEQKYLAGVS
CCCCCCCCCCCCCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
AQYESEVVYHNMKEDLEKLGVIFKDTDSALKENEDLFREHFAKVVPPTDNKFAALNSAVW
CHHHHHHHHHHHHHHHHHHCEEEECCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHC
SGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPIYTTNS
CCCCEEEECCCCEECCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCEEECCH
LHSAVVEIIVKKGAYCRYTTIQNWANNVFNLVTKRAVCEENATMEWIDGNIGSKLTMKYP
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECC
AVILKGEGARGLTLSIAIAGKGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIV
EEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEHH
HFGRKASGSRSNIECDTLILDNQSTSDTIPYNEILNDNISLEHEAKVSKVSEEQLFYLMS
HHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCC
>Mature Secondary Structure 
AKKAPEIGEYKYGFVDKDVSIFRAQRGLTREVVEEISRMKNEPQWMLEFRLKALDIFYS
CCCCCCCCCEECCEECCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
KPMPQWGGDLSSLDFDEITYYVKPTEKSGRSWDEVPEEIKATFDKLGIPEAEQKYLAGVS
CCCCCCCCCCCCCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
AQYESEVVYHNMKEDLEKLGVIFKDTDSALKENEDLFREHFAKVVPPTDNKFAALNSAVW
CHHHHHHHHHHHHHHHHHHCEEEECCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHC
SGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEGAHVHYVEGCTAPIYTTNS
CCCCEEEECCCCEECCCCEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCCEEECCH
LHSAVVEIIVKKGAYCRYTTIQNWANNVFNLVTKRAVCEENATMEWIDGNIGSKLTMKYP
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECC
AVILKGEGARGLTLSIAIAGKGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIV
EEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEHH
HFGRKASGSRSNIECDTLILDNQSTSDTIPYNEILNDNISLEHEAKVSKVSEEQLFYLMS
HHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RGISEQEATEMIVMGFIEPFTRELPMEYAVEMNRLIKFEMEGSIG
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]