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The map label for this gene is recO

Identifier: 138896060

GI number: 138896060

Start: 2532197

End: 2532973

Strand: Reverse

Name: recO

Synonym: GTNG_2423

Alternate gene names: 138896060

Gene position: 2532973-2532197 (Counterclockwise)

Preceding gene: 138896061

Following gene: 138896059

Centisome position: 71.34

GC content: 52.25

Gene sequence:

>777_bases
ATGTTTCAAAAGTGTGAAGCGATCGTCATACGGGCGATCGATTATGGCGAGACAAATAAAATTGTCACATTGTTTACACG
AGAATGGGGAAAGGTGGCTGCGATGGCACGGGGAGCGAAAAAGCCAAGCAGCCGCCTTTCTGCTGTTACGCAGCCGCTCG
CCTACGGCCATTACTTGATTCGCCGCAGCCGCGGCGTCGGCCTTCTTCATCAAGGGGAGCTTATTGACTCGATGCGAGTG
CTGCGTGAAGATTTGTTTGCCGCCGCTTATGCGGCGTATATTGTTGAGCTCACTGATAAAAGCACGGAGGAGCAAAAACG
TAATCCGTACTTGTTTGAGCTGCTGCTACAAACATTACAATATATGAGCGAAGGTCGCGATTTAGAGATTATGACCTTTA
TTTATGAAATGAAAATGCTTTCGGTGCTCGGCATCCCGCCTGTGCTCGACCGCTGCGCCCGCTGCGGGGCGACGGAAGGG
CGCTTCTCGTTTTCGGTCAAGGAAGCAGGCTTCCTTTGCCATCGTTGCGAGTCGGCCGATCCGCACCGCTTTCCGCTTTC
GCCGGCCTCAATTCGGCTGTTGCGCCTGTTTTACCATATTGACCTCACGCGCCTCGGAGCGATTTCGGTAAAAGAAGGCA
CCAAAGCAGAATTAAGGGCTGTATTGTCCAGTTACTATGATGAATATGCTGGCCTGTCGCTGAAGGCAAAGCGCTTTTTG
CAGCAAATCGGCGAGCTGAAAGGCACGCTTGACCCAGGCGATGGACGCAACAACTAA

Upstream 100 bases:

>100_bases
CGTGAACAGCGGTTTAACGGCAAGGAGCAAAACGCCGAACAGGAAGAAATCGACCAACCGATCTCCTAGTATTGTTGTTG
GCTAAAGCGGTGGTGATCGA

Downstream 100 bases:

>100_bases
TTTTCCTTGTAAACGCGGTGTGTAGTATAATATGAACGAGAGTCATAGCGTATGGGACCTTTTTTGCAAGGTGGTGAGCG
ACGATCGAACTGAATAAACG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLIRRSRGVGLLHQGELIDSMRV
LREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQYMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEG
RFSFSVKEAGFLCHRCESADPHRFPLSPASIRLLRLFYHIDLTRLGAISVKEGTKAELRAVLSSYYDEYAGLSLKAKRFL
QQIGELKGTLDPGDGRNN

Sequences:

>Translated_258_residues
MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLIRRSRGVGLLHQGELIDSMRV
LREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQYMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEG
RFSFSVKEAGFLCHRCESADPHRFPLSPASIRLLRLFYHIDLTRLGAISVKEGTKAELRAVLSSYYDEYAGLSLKAKRFL
QQIGELKGTLDPGDGRNN
>Mature_258_residues
MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLIRRSRGVGLLHQGELIDSMRV
LREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQYMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEG
RFSFSVKEAGFLCHRCESADPHRFPLSPASIRLLRLFYHIDLTRLGAISVKEGTKAELRAVLSSYYDEYAGLSLKAKRFL
QQIGELKGTLDPGDGRNN

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_GEOTN (A4IR14)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126513.1
- STRING:   A4IR14
- GeneID:   4967349
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2423
- NMPDR:   fig|420246.5.peg.2328
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- ProtClustDB:   PRK00085
- BioCyc:   GTHE420246:GTNG_2423-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29127; Mature: 29127

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLI
CCCHHHEHEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RRSRGVGLLHQGELIDSMRVLREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQ
HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHH
YMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEGRFSFSVKEAGFLCHRCESAD
HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCC
PHRFPLSPASIRLLRLFYHIDLTRLGAISVKEGTKAELRAVLSSYYDEYAGLSLKAKRFL
CCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
QQIGELKGTLDPGDGRNN
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFQKCEAIVIRAIDYGETNKIVTLFTREWGKVAAMARGAKKPSSRLSAVTQPLAYGHYLI
CCCHHHEHEEEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RRSRGVGLLHQGELIDSMRVLREDLFAAAYAAYIVELTDKSTEEQKRNPYLFELLLQTLQ
HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHH
YMSEGRDLEIMTFIYEMKMLSVLGIPPVLDRCARCGATEGRFSFSVKEAGFLCHRCESAD
HHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCC
PHRFPLSPASIRLLRLFYHIDLTRLGAISVKEGTKAELRAVLSSYYDEYAGLSLKAKRFL
CCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
QQIGELKGTLDPGDGRNN
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA