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The map label for this gene is ccpN [H]

Identifier: 138896059

GI number: 138896059

Start: 2531487

End: 2532083

Strand: Reverse

Name: ccpN [H]

Synonym: GTNG_2422

Alternate gene names: 138896059

Gene position: 2532083-2531487 (Counterclockwise)

Preceding gene: 138896060

Following gene: 138896058

Centisome position: 71.32

GC content: 47.4

Gene sequence:

>597_bases
TTGCAAATTGTAAAAGACTACGGGCCGATCACGGGGGAGAGCATCGCTGAAAAGCTGAACTTGACCCGGGCGACGCTTCG
ACCCGATCTAGCCATTTTGACGATGGCCGGCTATTTGGAAGCACGGCCGCGCGTCGGCTATTTTTATACTGGAAAGACGG
GCACGCAACTGTTGGCTGATAAAATTAAAAAAATGAAAGTCGCAGATTATCAATCGATTCCGGTCGTCGTCAACGAAAAC
ATGAGCGTCTATGATGCGATCGTTACGATGTTCCTGGAAGATGTGGGTACGCTGTTTGTCGTCGATGATGAGTCGCTGCT
TGTCGGTGTTTTGTCGCGCAAAGATTTGTTGCGTGCGAGCATCGGCAAACAAGAGTTGACGGCGATTCCGGTCAATATTA
TCATGACTAGAATGCCGAACATCGCCGTTTGTTATAAAGATGATTCGCTCATTGACGTAGCCGAGCAGCTGATCGAAAAG
CAAATTGATGCCATGCCGGTCGTGCGCAAAACGGAAAAAGGATATGAAGTGGTCGGTCGCATTACGAAAACGAATATGAC
GAAAGCATTTGTTTCATTAGCGAAAGATGATGTATGA

Upstream 100 bases:

>100_bases
CGCGGTGTGTAGTATAATATGAACGAGAGTCATAGCGTATGGGACCTTTTTTGCAAGGTGGTGAGCGACGATCGAACTGA
ATAAACGCCAGGAGCAAATT

Downstream 100 bases:

>100_bases
GTCCAAAAGGAGGAGACACATGAATCAGCGCCTCGTTTACGTCGTATCTGATTCGGGTGGGGAAACGGCCGAGCTTGTCG
TGAAAGCGGCGGCCAGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Catabolite control protein N; Control catabolite protein of gluconeogenesis [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQIVKDYGPITGESIAEKLNLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGTQLLADKIKKMKVADYQSIPVVVNEN
MSVYDAIVTMFLEDVGTLFVVDDESLLVGVLSRKDLLRASIGKQELTAIPVNIIMTRMPNIAVCYKDDSLIDVAEQLIEK
QIDAMPVVRKTEKGYEVVGRITKTNMTKAFVSLAKDDV

Sequences:

>Translated_198_residues
MQIVKDYGPITGESIAEKLNLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGTQLLADKIKKMKVADYQSIPVVVNEN
MSVYDAIVTMFLEDVGTLFVVDDESLLVGVLSRKDLLRASIGKQELTAIPVNIIMTRMPNIAVCYKDDSLIDVAEQLIEK
QIDAMPVVRKTEKGYEVVGRITKTNMTKAFVSLAKDDV
>Mature_198_residues
MQIVKDYGPITGESIAEKLNLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGTQLLADKIKKMKVADYQSIPVVVNEN
MSVYDAIVTMFLEDVGTLFVVDDESLLVGVLSRKDLLRASIGKQELTAIPVNIIMTRMPNIAVCYKDDSLIDVAEQLIEK
QIDAMPVVRKTEKGYEVVGRITKTNMTKAFVSLAKDDV

Specific function: Transcription repressor that binds to the promoter of gapB and pckA genes, preventing their expression. Acts as a regulator for catabolite repression of gluconeogenic genes [H]

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR016842
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 21981; Mature: 21981

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIVKDYGPITGESIAEKLNLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGTQLLAD
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEHHHHHCCCCCCCEEEECCCCHHHHHH
KIKKMKVADYQSIPVVVNENMSVYDAIVTMFLEDVGTLFVVDDESLLVGVLSRKDLLRAS
HHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHH
IGKQELTAIPVNIIMTRMPNIAVCYKDDSLIDVAEQLIEKQIDAMPVVRKTEKGYEVVGR
CCCHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHH
ITKTNMTKAFVSLAKDDV
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIVKDYGPITGESIAEKLNLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGTQLLAD
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHEEEHHHHHCCCCCCCEEEECCCCHHHHHH
KIKKMKVADYQSIPVVVNENMSVYDAIVTMFLEDVGTLFVVDDESLLVGVLSRKDLLRAS
HHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHH
IGKQELTAIPVNIIMTRMPNIAVCYKDDSLIDVAEQLIEKQIDAMPVVRKTEKGYEVVGR
CCCHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHH
ITKTNMTKAFVSLAKDDV
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]