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The map label for this gene is yrbE [H]

Identifier: 138895463

GI number: 138895463

Start: 1921974

End: 1922996

Strand: Reverse

Name: yrbE [H]

Synonym: GTNG_1811

Alternate gene names: 138895463

Gene position: 1922996-1921974 (Counterclockwise)

Preceding gene: 138895464

Following gene: 138895462

Centisome position: 54.16

GC content: 43.89

Gene sequence:

>1023_bases
ATGGCATTGACTGTAGGGGTAATCGGTGCGGGGAGAATTGGGAAATTGCATGTAGACAATTTGCGATTAATCCCGCAAGT
TCGTGTAAAGAGTGTTTCAGACGTTGTGATTAACCACCTTGATTCATGGGCAAAGGAAAAGCAAGTTGAAGTATTAACAA
GTGATTACCGCGATATATTAAATGACCCGGAAATTGATGCTGTGTTTATTTGCTCCCCAACAAATACGCATGCAACCATT
ATTAAGGAGGCTGCTGTAGCGGGAAAACATATTTTTTGTGAAAAACCCGTTAGCTTTACGGTGGAGGAAACGAAAGAAGC
GCTTGAGGTAGTTGAAAAAACTCAAGTAAAGCTTCAAGTCGGATTTAATCGTCGATTTGACCCGAATTTCCGTAAAATTC
GGGAACTTGTCCAAAATGGAACAATCGGCGAGCCGCATATTTTACGTATTACCTCGAGAGATCCCGAACCGCCAAGTATT
GACTACATAAAGTCGTCAGGTGGACTGTTTATGGATATGATGATTCACGACTTTGATATGGCCCGTTACATTATGGGAAG
TGAAGTCGTAGAAGTGTCCGCTTACGGAGCGGTGTTAGTAGATCCAGCGATAGGGGAAGCGGGAGATATCGATACAGCAG
TGGTGACGTTGAAATTTGCCAACGGAGCACTTGGGGTCATTGACAATAGCCGCCAAGCTGTTTACGGATACGATCAACGC
TTAGAGGTTTTCGGAAGCAAAGGAGCTGCACGAGCGGACAATAACCGTCCTACAAATGTCGAGGTTTCTACTGCTGAACA
TGTTTTAAAAGATAAACCGTTGTACTTTTTCTTAGAACGTTATACACAGGCTTATATCCATGAGGTAGCGGAGTTTGTAA
AGGCTATCCTTCATAATGAACCTGTGATCTGCAGTGGTTTTGATGGGTTGCAGGCACAACGGATTGCCGAAGCGGCGAAA
AAATCGCTAGAAACCGGTGTACCGGTGAAGCTAGAAGAAGTTAATCCAGCAGCTGCTATCTAA

Upstream 100 bases:

>100_bases
GACTTGATATTCTGTATAGAGGTTGTATAATAATGTTAGGAAAGCGCTTAACTCTAATACCCCCGGTTGTGAAATCGCTT
TTATAAAGGAGGATCAGTCT

Downstream 100 bases:

>100_bases
TCGTTGTTGGTGAAAGCGGATTCGTAGAGAACCTATATTCCGGACAATGGAAGAGGAGGTTAGAAAATAGTGAGTACCAT
TCGGTTAACCACTGCACAAG

Product: oxidoreductase, NAD-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MALTVGVIGAGRIGKLHVDNLRLIPQVRVKSVSDVVINHLDSWAKEKQVEVLTSDYRDILNDPEIDAVFICSPTNTHATI
IKEAAVAGKHIFCEKPVSFTVEETKEALEVVEKTQVKLQVGFNRRFDPNFRKIRELVQNGTIGEPHILRITSRDPEPPSI
DYIKSSGGLFMDMMIHDFDMARYIMGSEVVEVSAYGAVLVDPAIGEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQR
LEVFGSKGAARADNNRPTNVEVSTAEHVLKDKPLYFFLERYTQAYIHEVAEFVKAILHNEPVICSGFDGLQAQRIAEAAK
KSLETGVPVKLEEVNPAAAI

Sequences:

>Translated_340_residues
MALTVGVIGAGRIGKLHVDNLRLIPQVRVKSVSDVVINHLDSWAKEKQVEVLTSDYRDILNDPEIDAVFICSPTNTHATI
IKEAAVAGKHIFCEKPVSFTVEETKEALEVVEKTQVKLQVGFNRRFDPNFRKIRELVQNGTIGEPHILRITSRDPEPPSI
DYIKSSGGLFMDMMIHDFDMARYIMGSEVVEVSAYGAVLVDPAIGEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQR
LEVFGSKGAARADNNRPTNVEVSTAEHVLKDKPLYFFLERYTQAYIHEVAEFVKAILHNEPVICSGFDGLQAQRIAEAAK
KSLETGVPVKLEEVNPAAAI
>Mature_339_residues
ALTVGVIGAGRIGKLHVDNLRLIPQVRVKSVSDVVINHLDSWAKEKQVEVLTSDYRDILNDPEIDAVFICSPTNTHATII
KEAAVAGKHIFCEKPVSFTVEETKEALEVVEKTQVKLQVGFNRRFDPNFRKIRELVQNGTIGEPHILRITSRDPEPPSID
YIKSSGGLFMDMMIHDFDMARYIMGSEVVEVSAYGAVLVDPAIGEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQRL
EVFGSKGAARADNNRPTNVEVSTAEHVLKDKPLYFFLERYTQAYIHEVAEFVKAILHNEPVICSGFDGLQAQRIAEAAKK
SLETGVPVKLEEVNPAAAI

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=245, Percent_Identity=26.1224489795918, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082405, Length=257, Percent_Identity=22.9571984435798, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081947, Length=143, Percent_Identity=28.6713286713287, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789848, Length=124, Percent_Identity=29.8387096774194, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581115, Length=211, Percent_Identity=23.696682464455, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37461; Mature: 37330

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTVGVIGAGRIGKLHVDNLRLIPQVRVKSVSDVVINHLDSWAKEKQVEVLTSDYRDIL
CEEEEEEECCCCCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NDPEIDAVFICSPTNTHATIIKEAAVAGKHIFCEKPVSFTVEETKEALEVVEKTQVKLQV
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHEEEEEE
GFNRRFDPNFRKIRELVQNGTIGEPHILRITSRDPEPPSIDYIKSSGGLFMDMMIHDFDM
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEHHHHHHHH
ARYIMGSEVVEVSAYGAVLVDPAIGEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQR
HHHHHCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEECCHHH
LEVFGSKGAARADNNRPTNVEVSTAEHVLKDKPLYFFLERYTQAYIHEVAEFVKAILHNE
HHEECCCCCCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PVICSGFDGLQAQRIAEAAKKSLETGVPVKLEEVNPAAAI
CEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure 
ALTVGVIGAGRIGKLHVDNLRLIPQVRVKSVSDVVINHLDSWAKEKQVEVLTSDYRDIL
EEEEEEECCCCCCEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NDPEIDAVFICSPTNTHATIIKEAAVAGKHIFCEKPVSFTVEETKEALEVVEKTQVKLQV
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHEEEEEE
GFNRRFDPNFRKIRELVQNGTIGEPHILRITSRDPEPPSIDYIKSSGGLFMDMMIHDFDM
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEHHHHHHHH
ARYIMGSEVVEVSAYGAVLVDPAIGEAGDIDTAVVTLKFANGALGVIDNSRQAVYGYDQR
HHHHHCCCEEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEECCHHH
LEVFGSKGAARADNNRPTNVEVSTAEHVLKDKPLYFFLERYTQAYIHEVAEFVKAILHNE
HHEECCCCCCCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PVICSGFDGLQAQRIAEAAKKSLETGVPVKLEEVNPAAAI
CEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]