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The map label for this gene is lsrB [H]

Identifier: 138895456

GI number: 138895456

Start: 1912506

End: 1913507

Strand: Reverse

Name: lsrB [H]

Synonym: GTNG_1804

Alternate gene names: 138895456

Gene position: 1913507-1912506 (Counterclockwise)

Preceding gene: 138895457

Following gene: 138895455

Centisome position: 53.9

GC content: 43.71

Gene sequence:

>1002_bases
ATGAAAAAATTAGCAATTATTTATGTCTGCTTGATTGGTTTGTTTCTTCTTTATATATATCGCTATCATTTCGAAATTTC
TCACCTTCGTTTATCCTCCCAAGAAGAGACGGCATTTCAAGGCCAACCTAACGAAAAATACGTCATGATCACCTTCCAAT
CAGGAATGGATTATTGGAAGCGCTGTCTCAAAGGGTTTGAAGACGCCGCCGAGGAGTTGAACGTCTCTGTAGAATATCGC
GGAGCGACACAGTATGATGTCAATGAACAAGTGACGGTGCTAGAACAGGTGATCGCAAGGAAGCCGGCGGGTATTGCTAT
TTCGGCGATTAATCCGACAGCGTTGACGAAAACGATCAACAAGGCAGTGGAGAAAGGAATTCCAGTTGTGTTGTTTGATT
CGAATGCTTCGGGAAGCAAGGCGTTTTCGTTTTTAGGGACGAATAACTATAATGCTGGAGTGACAGCAGCTCATGAAATG
GCGAAACTGTTGGGGAATAAAGGGAATGTCGGGATCATTACTTCGCCTTATCAGCTTAATCACCAAGAGAGAACAAGAGG
GTTTGTCGAGACAATTTATCAAAAATACCCACAAATGCATGTGGTGGCTGTAAAAAATGGGAAAGGGGATGTTAGGGCTT
CCAAACAGGCGGCGATAGAGATCTTAAAGGATTACCCAGATGTGCAGGGGATCTTCGCAACGGAAGCGAATGGGGGAGTT
GGCATGGCCGAGGCCGTTGTGATGTTGAATAAAAAGCATGTAAAATTGATTAGTTTTGATACGGAAAAACAAACGTTAGA
TTTGGTGAAAAAGGGTGTCATTGCTGCGACATTGGCGCAAGGAACATGGAATATGGGATACTGGTCGTTGCAGTTTTTAT
TTCAACTTCATCATCGCCTTACGTCTTCTTCGCGGTCAGGGGATTTGCCTCTGCCGGTGTATGTCGATACAGGGATCACG
GTTGTTACGAAAGAAAATGTGGATCGTTTTTATGCCAGATAA

Upstream 100 bases:

>100_bases
CGTCACCTATACTTAGGGAATAATACGTCATCCCATTGGTTTCGATTGATGAAAGTTTTTATTAAAGAGATTTGAGAATA
TTGCAGGGGGGAGGGTTAAT

Downstream 100 bases:

>100_bases
AGAAGAAATGAGTGATCGATGTTGGGAGTACGAAAACGTTGGCGAGTTCGTCATTGGCCGATACGGTACAAGTTTGTTTC
CTTGTTGCTGATTTCTATGA

Product: ABC transporter sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKKLAIIYVCLIGLFLLYIYRYHFEISHLRLSSQEETAFQGQPNEKYVMITFQSGMDYWKRCLKGFEDAAEELNVSVEYR
GATQYDVNEQVTVLEQVIARKPAGIAISAINPTALTKTINKAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEM
AKLLGNKGNVGIITSPYQLNHQERTRGFVETIYQKYPQMHVVAVKNGKGDVRASKQAAIEILKDYPDVQGIFATEANGGV
GMAEAVVMLNKKHVKLISFDTEKQTLDLVKKGVIAATLAQGTWNMGYWSLQFLFQLHHRLTSSSRSGDLPLPVYVDTGIT
VVTKENVDRFYAR

Sequences:

>Translated_333_residues
MKKLAIIYVCLIGLFLLYIYRYHFEISHLRLSSQEETAFQGQPNEKYVMITFQSGMDYWKRCLKGFEDAAEELNVSVEYR
GATQYDVNEQVTVLEQVIARKPAGIAISAINPTALTKTINKAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEM
AKLLGNKGNVGIITSPYQLNHQERTRGFVETIYQKYPQMHVVAVKNGKGDVRASKQAAIEILKDYPDVQGIFATEANGGV
GMAEAVVMLNKKHVKLISFDTEKQTLDLVKKGVIAATLAQGTWNMGYWSLQFLFQLHHRLTSSSRSGDLPLPVYVDTGIT
VVTKENVDRFYAR
>Mature_333_residues
MKKLAIIYVCLIGLFLLYIYRYHFEISHLRLSSQEETAFQGQPNEKYVMITFQSGMDYWKRCLKGFEDAAEELNVSVEYR
GATQYDVNEQVTVLEQVIARKPAGIAISAINPTALTKTINKAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEM
AKLLGNKGNVGIITSPYQLNHQERTRGFVETIYQKYPQMHVVAVKNGKGDVRASKQAAIEILKDYPDVQGIFATEANGGV
GMAEAVVMLNKKHVKLISFDTEKQTLDLVKKGVIAATLAQGTWNMGYWSLQFLFQLHHRLTSSSRSGDLPLPVYVDTGIT
VVTKENVDRFYAR

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=246, Percent_Identity=24.7967479674797, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787795, Length=236, Percent_Identity=24.5762711864407, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37075; Mature: 37075

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLAIIYVCLIGLFLLYIYRYHFEISHLRLSSQEETAFQGQPNEKYVMITFQSGMDYWK
CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHCCCCCCCEEEEEECCCHHHHH
RCLKGFEDAAEELNVSVEYRGATQYDVNEQVTVLEQVIARKPAGIAISAINPTALTKTIN
HHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
KAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEMAKLLGNKGNVGIITSPYQLN
HHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
HQERTRGFVETIYQKYPQMHVVAVKNGKGDVRASKQAAIEILKDYPDVQGIFATEANGGV
CHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
GMAEAVVMLNKKHVKLISFDTEKQTLDLVKKGVIAATLAQGTWNMGYWSLQFLFQLHHRL
CHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCHHEEEECCCCCCCCHHHHHHHHHHHHHH
TSSSRSGDLPLPVYVDTGITVVTKENVDRFYAR
HCCCCCCCCCEEEEECCCEEEEEECCCHHHHCC
>Mature Secondary Structure
MKKLAIIYVCLIGLFLLYIYRYHFEISHLRLSSQEETAFQGQPNEKYVMITFQSGMDYWK
CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHCCCCCCCEEEEEECCCHHHHH
RCLKGFEDAAEELNVSVEYRGATQYDVNEQVTVLEQVIARKPAGIAISAINPTALTKTIN
HHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
KAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEMAKLLGNKGNVGIITSPYQLN
HHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
HQERTRGFVETIYQKYPQMHVVAVKNGKGDVRASKQAAIEILKDYPDVQGIFATEANGGV
CHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
GMAEAVVMLNKKHVKLISFDTEKQTLDLVKKGVIAATLAQGTWNMGYWSLQFLFQLHHRL
CHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCHHEEEECCCCCCCCHHHHHHHHHHHHHH
TSSSRSGDLPLPVYVDTGITVVTKENVDRFYAR
HCCCCCCCCCEEEEECCCEEEEEECCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA