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The map label for this gene is xylH [H]

Identifier: 138895451

GI number: 138895451

Start: 1905283

End: 1906506

Strand: Reverse

Name: xylH [H]

Synonym: GTNG_1799

Alternate gene names: 138895451

Gene position: 1906506-1905283 (Counterclockwise)

Preceding gene: 138895452

Following gene: 138895450

Centisome position: 53.7

GC content: 44.61

Gene sequence:

>1224_bases
ATGGAAGCACCGATGCAAAAAACAGTACACCAACCTTCAAAGCGGTCAACAAAGGACGAACGGTTAACTTTCAAACAGAT
GATAAAAAGCAATATGAGAAGCTATAGCATGGTGATCGCTCTCGTCTTGATCATGTTATTGTTTCAATTATTAACGGGAG
GCATTTTATTAAGGCCGCTAAATATTACGAACTTAATCTTGCAAAACAGTTATATTTTAGTGTTGGCTGTTGGAATGATG
CTTGTCATTATTACTGGACATATCGACTTATCGGTCGGATCGGTGGCAGCCTTTGTCGGGGCTTTGGCTGGCATTCTTAT
GGTTCAACATCATGTACCGGTTTGGATGACAGTTCTCATTTGCTTAGTGCTAGGAGCCTTGATTGGGGCATGGCAAGGAT
TTTGGGTTGCCTACGTGAAAATCCCGGCGTTTATTGTGACGTTGGCAGGCATGTTACTGTTTCGCGGGTTGACGATGGTC
ATTTTAGAGGGGCAATCAATCGCCCCGTTTCCGAAAACATTCCAAAATATTAGTTCAGGGTTTCTTCCGGATCTATTTAA
TGGGGGATCTCTTCATCTTTTCACTCTTGTGGTCGGTTTAGCGATTTCTGTCTTATTTATCGCATTGGAATGGCGAAAAC
GAAACGGCCAAAAAAAATACGGCTTTGCGGTCAGTCCTGCCCCGGTGTTTGGGATAAAAATGGCCGTCATTGTTGCCGTT
ATTATGATCTTCTCTTATATTTTGGCGACGTACGAAGGAATTCCGACAATCTTAGTTATTTTGGCTGCGTTGATCATTGC
TTATTCATTTGTCGCTAATCGAACGGTCGTTGGGCGTCACATTTATGCTATTGGCGGCAATGAAAAGGCAGCCCAACTGT
CAGGGATTAAAACAAAACGTGTCACTTTTTGGGTGTTTGTGAATATGGGGGTATTGGCCGCTTTGTCCGGACTAATTTTT
GCTGCCCGTCTCAACGCAGCGACGCCAAAAGCAGGAAATTTGTTTGAACTCGATGCCATCGCGGCATGCTTTATTGGAGG
TGCATCTGCTTATGGCGGCGTCGGTACGATCGGTGGGGCGATCATCGGTGGTCTTGTCATGGGCGTAATGAATAACGGGA
TGTCCTTACTTGGACTGGGCATCGACTGGCAACAAGCCATTAAAGGACTTGTTCTGCTTGCCGCTGTTGCCTTTGATATT
TACAACAAAAACAAAGCTGCGTAA

Upstream 100 bases:

>100_bases
AGCGAAGGACGCATCACTGGTGAAGTTGTACGGGAAGAAGCAACACAGGAAAAATTAATGAGACTAATGACAAAAACGGC
TATTCGGGAGGGAGTATAAG

Downstream 100 bases:

>100_bases
GCAAAACAAAGGGTCAAGCCAATCTGCTTGGCCCTTTGTTATTAAAAATAGATACGAACAAATGAGAATTGCTATAATAA
AATTAATTTGTATCTCATTT

Product: L-arabinose membrane permease

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MEAPMQKTVHQPSKRSTKDERLTFKQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPLNITNLILQNSYILVLAVGMM
LVIITGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLICLVLGALIGAWQGFWVAYVKIPAFIVTLAGMLLFRGLTMV
ILEGQSIAPFPKTFQNISSGFLPDLFNGGSLHLFTLVVGLAISVLFIALEWRKRNGQKKYGFAVSPAPVFGIKMAVIVAV
IMIFSYILATYEGIPTILVILAALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIF
AARLNAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLAAVAFDI
YNKNKAA

Sequences:

>Translated_407_residues
MEAPMQKTVHQPSKRSTKDERLTFKQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPLNITNLILQNSYILVLAVGMM
LVIITGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLICLVLGALIGAWQGFWVAYVKIPAFIVTLAGMLLFRGLTMV
ILEGQSIAPFPKTFQNISSGFLPDLFNGGSLHLFTLVVGLAISVLFIALEWRKRNGQKKYGFAVSPAPVFGIKMAVIVAV
IMIFSYILATYEGIPTILVILAALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIF
AARLNAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLAAVAFDI
YNKNKAA
>Mature_407_residues
MEAPMQKTVHQPSKRSTKDERLTFKQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPLNITNLILQNSYILVLAVGMM
LVIITGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLICLVLGALIGAWQGFWVAYVKIPAFIVTLAGMLLFRGLTMV
ILEGQSIAPFPKTFQNISSGFLPDLFNGGSLHLFTLVVGLAISVLFIALEWRKRNGQKKYGFAVSPAPVFGIKMAVIVAV
IMIFSYILATYEGIPTILVILAALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIF
AARLNAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLAAVAFDI
YNKNKAA

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=384, Percent_Identity=40.8854166666667, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI145693152, Length=347, Percent_Identity=31.4121037463977, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=44.4444444444444, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788896, Length=165, Percent_Identity=34.5454545454545, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790524, Length=146, Percent_Identity=43.8356164383562, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082395, Length=195, Percent_Identity=35.3846153846154, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI145693214, Length=331, Percent_Identity=31.4199395770393, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788471, Length=127, Percent_Identity=41.7322834645669, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787793, Length=163, Percent_Identity=34.9693251533742, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 43516; Mature: 43516

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAPMQKTVHQPSKRSTKDERLTFKQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPL
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
NITNLILQNSYILVLAVGMMLVIITGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLI
CHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
CLVLGALIGAWQGFWVAYVKIPAFIVTLAGMLLFRGLTMVILEGQSIAPFPKTFQNISSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHCC
FLPDLFNGGSLHLFTLVVGLAISVLFIALEWRKRNGQKKYGFAVSPAPVFGIKMAVIVAV
CCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHH
IMIFSYILATYEGIPTILVILAALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEEECCCCCHHHHCCCCCHH
VTFWVFVNMGVLAALSGLIFAARLNAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGA
EEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHH
IIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLAAVAFDIYNKNKAA
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEAPMQKTVHQPSKRSTKDERLTFKQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPL
CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
NITNLILQNSYILVLAVGMMLVIITGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLI
CHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
CLVLGALIGAWQGFWVAYVKIPAFIVTLAGMLLFRGLTMVILEGQSIAPFPKTFQNISSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHCC
FLPDLFNGGSLHLFTLVVGLAISVLFIALEWRKRNGQKKYGFAVSPAPVFGIKMAVIVAV
CCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHH
IMIFSYILATYEGIPTILVILAALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEEECCCCCHHHHCCCCCHH
VTFWVFVNMGVLAALSGLIFAARLNAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGA
EEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHH
IIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLAAVAFDIYNKNKAA
HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]