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The map label for this gene is araQ [H]

Identifier: 138895444

GI number: 138895444

Start: 1896357

End: 1897202

Strand: Reverse

Name: araQ [H]

Synonym: GTNG_1792

Alternate gene names: 138895444

Gene position: 1897202-1896357 (Counterclockwise)

Preceding gene: 138895445

Following gene: 138895443

Centisome position: 53.44

GC content: 37.35

Gene sequence:

>846_bases
TTGACGCAGACGGCCAAAATCCACCCGATCGCAAAGGTGATAGTTGTATTAATACTGTTGTTCTTAGCTATTGTTGCACT
TTTTCCGTTTTTTGCCTTATTACTTGCATCCTTTAAGCCATCTACGGAGTTGCTCAGATATGGCTTAAATTTAAAATTAC
AGGCACATTTGCTGTCATTTAAAAACTATATCTACCTTTTCCAGGAAGGGGCAAAATATCTGGCTTGGTATAAAAATAGT
TTGATTATTACCGCTGTGGGAACTGTGTTATCTTTACTCTTTTCTTCTATGGTTGGGTATGCATTGGCAGTGTACGATTT
CAAGGGTAGGAATGCAATTTTTATTCTTGTTTTGACTGTAATGATGATTCCTATCGAAATTTTGATGTTACCTTTATACA
AATTGATGGTGTCCTTCAAAATGATTAACACATACTGGGGGGTTATTGTCCCCACCATGGTAGCCCCTATTGCTATCTTC
TTTTTTAGGCAATACGCATTAGGATTGCCAAAGGAATTGCTTGATGCAGCTAGAATAGATGGATGTTCCGAATTTAGAAT
TTTTTTCAGCATTATGGTTCCGTTAATGAAGCCTGCGTTTGGAGCGATGGCTATTTTACAGGCAATGGGTTATTGGAATA
GCTTTCTATGGCCGACCGTCATTCTGAGAACAGAGGATATGTTCACGTTACCAATCGGCTTATCAGGGTTGTTAACACCT
TATGGTAATAACTACGATATTTTAATTTCTGGATCTTTGTTAACGATTCTCCCGATTATTGTATTATTCATGTTTTTCCA
ACGTTACTTTATTTCTGGTTTAACGGTAGGAGGAGTGAAAGGTTAA

Upstream 100 bases:

>100_bases
ATTCGGTTCTGCTATCGGGATCGTGCTTCTGATCATCGTGTTTGTTATTAATATCATTCAGTTGAAGGTTACTGGCGCCT
TCAAGAAGGAGGGGTAAGGT

Downstream 100 bases:

>100_bases
TAGCAATGATTTAAACCATATGGAAAGGATGTATTAATTATGAGTGTGAAAAGAGCCCAAATGATCATCGAAAAAGACTT
CAAAATCGCTGAAATCGACA

Product: L-arabinose transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTQTAKIHPIAKVIVVLILLFLAIVALFPFFALLLASFKPSTELLRYGLNLKLQAHLLSFKNYIYLFQEGAKYLAWYKNS
LIITAVGTVLSLLFSSMVGYALAVYDFKGRNAIFILVLTVMMIPIEILMLPLYKLMVSFKMINTYWGVIVPTMVAPIAIF
FFRQYALGLPKELLDAARIDGCSEFRIFFSIMVPLMKPAFGAMAILQAMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTP
YGNNYDILISGSLLTILPIIVLFMFFQRYFISGLTVGGVKG

Sequences:

>Translated_281_residues
MTQTAKIHPIAKVIVVLILLFLAIVALFPFFALLLASFKPSTELLRYGLNLKLQAHLLSFKNYIYLFQEGAKYLAWYKNS
LIITAVGTVLSLLFSSMVGYALAVYDFKGRNAIFILVLTVMMIPIEILMLPLYKLMVSFKMINTYWGVIVPTMVAPIAIF
FFRQYALGLPKELLDAARIDGCSEFRIFFSIMVPLMKPAFGAMAILQAMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTP
YGNNYDILISGSLLTILPIIVLFMFFQRYFISGLTVGGVKG
>Mature_280_residues
TQTAKIHPIAKVIVVLILLFLAIVALFPFFALLLASFKPSTELLRYGLNLKLQAHLLSFKNYIYLFQEGAKYLAWYKNSL
IITAVGTVLSLLFSSMVGYALAVYDFKGRNAIFILVLTVMMIPIEILMLPLYKLMVSFKMINTYWGVIVPTMVAPIAIFF
FRQYALGLPKELLDAARIDGCSEFRIFFSIMVPLMKPAFGAMAILQAMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTPY
GNNYDILISGSLLTILPIIVLFMFFQRYFISGLTVGGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=255, Percent_Identity=29.0196078431373, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787571, Length=261, Percent_Identity=31.0344827586207, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1790464, Length=215, Percent_Identity=25.5813953488372, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31628; Mature: 31497

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTAKIHPIAKVIVVLILLFLAIVALFPFFALLLASFKPSTELLRYGLNLKLQAHLLSF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHH
KNYIYLFQEGAKYLAWYKNSLIITAVGTVLSLLFSSMVGYALAVYDFKGRNAIFILVLTV
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
MMIPIEILMLPLYKLMVSFKMINTYWGVIVPTMVAPIAIFFFRQYALGLPKELLDAARID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GCSEFRIFFSIMVPLMKPAFGAMAILQAMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCHHHCCC
YGNNYDILISGSLLTILPIIVLFMFFQRYFISGLTVGGVKG
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TQTAKIHPIAKVIVVLILLFLAIVALFPFFALLLASFKPSTELLRYGLNLKLQAHLLSF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHH
KNYIYLFQEGAKYLAWYKNSLIITAVGTVLSLLFSSMVGYALAVYDFKGRNAIFILVLTV
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
MMIPIEILMLPLYKLMVSFKMINTYWGVIVPTMVAPIAIFFFRQYALGLPKELLDAARID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GCSEFRIFFSIMVPLMKPAFGAMAILQAMGYWNSFLWPTVILRTEDMFTLPIGLSGLLTP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCHHHCCC
YGNNYDILISGSLLTILPIIVLFMFFQRYFISGLTVGGVKG
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]