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The map label for this gene is araP [H]

Identifier: 138895445

GI number: 138895445

Start: 1897206

End: 1898138

Strand: Reverse

Name: araP [H]

Synonym: GTNG_1793

Alternate gene names: 138895445

Gene position: 1898138-1897206 (Counterclockwise)

Preceding gene: 138895446

Following gene: 138895444

Centisome position: 53.46

GC content: 38.69

Gene sequence:

>933_bases
GTGGAAAATAAATTAGACTACTCAGTACAGGCAGTACCCCAGAAACGAAAAGGAAATGGGATTATTTTTTCTCAAAAAGT
TGCTCCGTATATTTTTGTATCGCCGTTTATCCTGTCCTTTTTAATATTTTTCCTTTATCCTTCCATTTCGACGATTATAA
TGAGTTTTCAAGAAGTATTACCTGGTGAAACGAAGTTTATTGGGGTAGAAAATTATAAAAAACTACTCAATCCACATTTT
TATGCAGCTTTGCGTAATACAACAATTTACACTATTTGGACACTAATTATTCTAATCCCACTTCCTTTAGTGCTAGCGGT
CATATTGAATTCTAAGGCTATACCAGGACGTAATTTTTTTCGCTCTGCCTATTTCATCCCGGCCTTAACTTCTACCATTG
TAGTCGGGGTAGTGTTCCGCTTAATCTTTGGAGAGTTGGAATCGGCGCCTGCGAATGCGCTATTGAAATTGCTAGGAATG
CCAGCCCAACAGTGGACGATGCATTGGGGAACAGGAATGTTTTTAATGGTATTTTTAGCTTCTTGGAAGTGGCTAGGGGT
GAATATTTTGTATTTTCTCTCGGGGTTGCAAAGTATTCCGAAAGAACTCTATGAGTCGGCAGAGATAGACGGAGCTGGGA
TGTTCAGGAAGTTTTTTTATATTACACTTCCACTTTTAAAACCCGTAGTCATCTATGTGTTAACGATTAGTATTTTTGGC
GGGTTCAGAATGTACGAGGAAAGTTTTGTGTTTTGGCAAAATCAGTCTCCTGGTGATATTGGACTTACTTTAGTAGGTTA
CATTTATCGGGAAGGGTTTATAAATAATGACATGGGATTCGGTTCTGCTATCGGGATCGTGCTTCTGATCATCGTGTTTG
TTATTAATATCATTCAGTTGAAGGTTACTGGCGCCTTCAAGAAGGAGGGGTAA

Upstream 100 bases:

>100_bases
GGGAAGATTCGAGTGACGCCATAGCTTTGAGTCTTCCCTCGCCATTTAATGTTTCCCGGCTTGGGAAGAGTATAACATTG
GGAATAAGGGGGGACTATCG

Downstream 100 bases:

>100_bases
GGTTTGACGCAGACGGCCAAAATCCACCCGATCGCAAAGGTGATAGTTGTATTAATACTGTTGTTCTTAGCTATTGTTGC
ACTTTTTCCGTTTTTTGCCT

Product: L-arabinose transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MENKLDYSVQAVPQKRKGNGIIFSQKVAPYIFVSPFILSFLIFFLYPSISTIIMSFQEVLPGETKFIGVENYKKLLNPHF
YAALRNTTIYTIWTLIILIPLPLVLAVILNSKAIPGRNFFRSAYFIPALTSTIVVGVVFRLIFGELESAPANALLKLLGM
PAQQWTMHWGTGMFLMVFLASWKWLGVNILYFLSGLQSIPKELYESAEIDGAGMFRKFFYITLPLLKPVVIYVLTISIFG
GFRMYEESFVFWQNQSPGDIGLTLVGYIYREGFINNDMGFGSAIGIVLLIIVFVINIIQLKVTGAFKKEG

Sequences:

>Translated_310_residues
MENKLDYSVQAVPQKRKGNGIIFSQKVAPYIFVSPFILSFLIFFLYPSISTIIMSFQEVLPGETKFIGVENYKKLLNPHF
YAALRNTTIYTIWTLIILIPLPLVLAVILNSKAIPGRNFFRSAYFIPALTSTIVVGVVFRLIFGELESAPANALLKLLGM
PAQQWTMHWGTGMFLMVFLASWKWLGVNILYFLSGLQSIPKELYESAEIDGAGMFRKFFYITLPLLKPVVIYVLTISIFG
GFRMYEESFVFWQNQSPGDIGLTLVGYIYREGFINNDMGFGSAIGIVLLIIVFVINIIQLKVTGAFKKEG
>Mature_310_residues
MENKLDYSVQAVPQKRKGNGIIFSQKVAPYIFVSPFILSFLIFFLYPSISTIIMSFQEVLPGETKFIGVENYKKLLNPHF
YAALRNTTIYTIWTLIILIPLPLVLAVILNSKAIPGRNFFRSAYFIPALTSTIVVGVVFRLIFGELESAPANALLKLLGM
PAQQWTMHWGTGMFLMVFLASWKWLGVNILYFLSGLQSIPKELYESAEIDGAGMFRKFFYITLPLLKPVVIYVLTISIFG
GFRMYEESFVFWQNQSPGDIGLTLVGYIYREGFINNDMGFGSAIGIVLLIIVFVINIIQLKVTGAFKKEG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=290, Percent_Identity=29.3103448275862, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787570, Length=263, Percent_Identity=30.4182509505703, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790465, Length=271, Percent_Identity=27.6752767527675, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34999; Mature: 34999

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKLDYSVQAVPQKRKGNGIIFSQKVAPYIFVSPFILSFLIFFLYPSISTIIMSFQEVL
CCCCCCCHHEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGETKFIGVENYKKLLNPHFYAALRNTTIYTIWTLIILIPLPLVLAVILNSKAIPGRNFF
CCCCEEEEHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RSAYFIPALTSTIVVGVVFRLIFGELESAPANALLKLLGMPAQQWTMHWGTGMFLMVFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
SWKWLGVNILYFLSGLQSIPKELYESAEIDGAGMFRKFFYITLPLLKPVVIYVLTISIFG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFRMYEESFVFWQNQSPGDIGLTLVGYIYREGFINNDMGFGSAIGIVLLIIVFVINIIQL
CHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KVTGAFKKEG
HEECCCCCCC
>Mature Secondary Structure
MENKLDYSVQAVPQKRKGNGIIFSQKVAPYIFVSPFILSFLIFFLYPSISTIIMSFQEVL
CCCCCCCHHEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGETKFIGVENYKKLLNPHFYAALRNTTIYTIWTLIILIPLPLVLAVILNSKAIPGRNFF
CCCCEEEEHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
RSAYFIPALTSTIVVGVVFRLIFGELESAPANALLKLLGMPAQQWTMHWGTGMFLMVFLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
SWKWLGVNILYFLSGLQSIPKELYESAEIDGAGMFRKFFYITLPLLKPVVIYVLTISIFG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFRMYEESFVFWQNQSPGDIGLTLVGYIYREGFINNDMGFGSAIGIVLLIIVFVINIIQL
CHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KVTGAFKKEG
HEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]