Click here to switch to the map view.

The map label for this gene is cbiD [H]

Identifier: 138895346

GI number: 138895346

Start: 1780313

End: 1781431

Strand: Reverse

Name: cbiD [H]

Synonym: GTNG_1690

Alternate gene names: 138895346

Gene position: 1781431-1780313 (Counterclockwise)

Preceding gene: 138895347

Following gene: 138895345

Centisome position: 50.18

GC content: 58.89

Gene sequence:

>1119_bases
ATGGAAACAAAAAAAACGCTGCGTGAAGGATATACGACCGGATTGTGCGCGGCAGCGGCCACGAAAGCCGCGCTCACAGC
CCTCATCACTGGCCAAGTGCAGACAGACGCGACGATTCGGATTCCGATCGGGCGGGTGGTGACCTTTTCGCTCGCCTCTT
GTTCGTTCGATGGCGAAACGGCGACGGCCTCGGTCGTGAAGGATGGCGGCGATGACCCAGATGCGACGCACGGCGCGCTC
ATCGTTTCCACTGTCTCGTGGGCCTCGTCGCCGGGCGTTCATATTGACGGCGGGGAAGGGGTCGGACGTGTCACGAAACC
CGGCTTGCCGGTGCCGGTCGGGGAAGCCGCGATCAATCCAGTGCCGCGGCAAATGATCCACGAAGCAGTCAACGAAGTAT
TGGCGCAATACGGTTTACATCGCGGGGTGAACGTTGTCATTTCCGTGCCCGGCGGCGAGGAAATCGCCAAAAAAACGTTG
AATCCGAGGCTTGGCATTATGGGCGGCATTTCGATTTTAGGAACGCGGGGCATCGTCGTTCCGTTCTCGACCGCCGCCTA
CCGGGCGAGCATCGTACAGGCGCTTCAAGTGGCGAAAGCGAACGGCTGCCGCCATGTCGTGATCACGACCGGGGGGCGGA
GCGAGAAATATGCCATGCAAGAGTATCCGCATTTGCCGGAAGAAGCATTTATTGAAATGGGTGATTTTGTCGGGTTTACG
CTGAAGCAATGCAAACGGCTTGGCATCAAGATGGTGTCGATGGTCGGGATGATGGGGAAATTTTCGAAAGTCGCCCAAGG
GGTGATGATGGTGCACTCGAAAAGCGCTCCGGTTGACTTCGGTTTTTTGGCGGCGCTCGCTGAGCAAGCCGGCGCCTCTT
CCGCGTTGGTGGCCGCGGTGCGCGGCGCGAACACGGCGGCGCAAGTCGGCGACATGATGCAAGAGGCCGGTTGCATGAAG
TTTTTCGAGCTTTTGTGCGAAGCGTGCTGCCAGGCGGCGCTTCACGAAGTGGGAGGCGGTCTGACGGTGGCGACGTCCAT
TTACACAATGAACGGACAACAATTAGGAAAGGCGGTGCAGACCGATGGGGACGATGAAGTTGATCGGTGTGGGTGCTGA

Upstream 100 bases:

>100_bases
TGTGCCGTTCATCACCAATCGCGGCCGCAAAGGAGGAAGCACCGTGACGGTCGCCGCTTTGAATGCGTTATCGCTGCTTG
CCGAGCGAGCGTGACGAACG

Downstream 100 bases:

>100_bases
TGGGCAAGCAAGTCTTCCTGAGCTGTATCGACGCTGGATTGATGAAAGCGAGCTGCTTGTCGGCGGCGAACGGCAGCTGG
CGATGTTTCCTGAATACAAA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
METKKTLREGYTTGLCAAAATKAALTALITGQVQTDATIRIPIGRVVTFSLASCSFDGETATASVVKDGGDDPDATHGAL
IVSTVSWASSPGVHIDGGEGVGRVTKPGLPVPVGEAAINPVPRQMIHEAVNEVLAQYGLHRGVNVVISVPGGEEIAKKTL
NPRLGIMGGISILGTRGIVVPFSTAAYRASIVQALQVAKANGCRHVVITTGGRSEKYAMQEYPHLPEEAFIEMGDFVGFT
LKQCKRLGIKMVSMVGMMGKFSKVAQGVMMVHSKSAPVDFGFLAALAEQAGASSALVAAVRGANTAAQVGDMMQEAGCMK
FFELLCEACCQAALHEVGGGLTVATSIYTMNGQQLGKAVQTDGDDEVDRCGC

Sequences:

>Translated_372_residues
METKKTLREGYTTGLCAAAATKAALTALITGQVQTDATIRIPIGRVVTFSLASCSFDGETATASVVKDGGDDPDATHGAL
IVSTVSWASSPGVHIDGGEGVGRVTKPGLPVPVGEAAINPVPRQMIHEAVNEVLAQYGLHRGVNVVISVPGGEEIAKKTL
NPRLGIMGGISILGTRGIVVPFSTAAYRASIVQALQVAKANGCRHVVITTGGRSEKYAMQEYPHLPEEAFIEMGDFVGFT
LKQCKRLGIKMVSMVGMMGKFSKVAQGVMMVHSKSAPVDFGFLAALAEQAGASSALVAAVRGANTAAQVGDMMQEAGCMK
FFELLCEACCQAALHEVGGGLTVATSIYTMNGQQLGKAVQTDGDDEVDRCGC
>Mature_372_residues
METKKTLREGYTTGLCAAAATKAALTALITGQVQTDATIRIPIGRVVTFSLASCSFDGETATASVVKDGGDDPDATHGAL
IVSTVSWASSPGVHIDGGEGVGRVTKPGLPVPVGEAAINPVPRQMIHEAVNEVLAQYGLHRGVNVVISVPGGEEIAKKTL
NPRLGIMGGISILGTRGIVVPFSTAAYRASIVQALQVAKANGCRHVVITTGGRSEKYAMQEYPHLPEEAFIEMGDFVGFT
LKQCKRLGIKMVSMVGMMGKFSKVAQGVMMVHSKSAPVDFGFLAALAEQAGASSALVAAVRGANTAAQVGDMMQEAGCMK
FFELLCEACCQAALHEVGGGLTVATSIYTMNGQQLGKAVQTDGDDEVDRCGC

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 38606; Mature: 38606

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKKTLREGYTTGLCAAAATKAALTALITGQVQTDATIRIPIGRVVTFSLASCSFDGET
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCEEEEEHHHCCCCCCH
ATASVVKDGGDDPDATHGALIVSTVSWASSPGVHIDGGEGVGRVTKPGLPVPVGEAAINP
HHHHHHHCCCCCCCCCCCEEEEEEEHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCC
VPRQMIHEAVNEVLAQYGLHRGVNVVISVPGGEEIAKKTLNPRLGIMGGISILGTRGIVV
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCHHCCHHHHCCCCEEE
PFSTAAYRASIVQALQVAKANGCRHVVITTGGRSEKYAMQEYPHLPEEAFIEMGDFVGFT
ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
LKQCKRLGIKMVSMVGMMGKFSKVAQGVMMVHSKSAPVDFGFLAALAEQAGASSALVAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHH
RGANTAAQVGDMMQEAGCMKFFELLCEACCQAALHEVGGGLTVATSIYTMNGQQLGKAVQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHC
TDGDDEVDRCGC
CCCCCCHHHCCC
>Mature Secondary Structure
METKKTLREGYTTGLCAAAATKAALTALITGQVQTDATIRIPIGRVVTFSLASCSFDGET
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCEEEEEHHHCCCCCCH
ATASVVKDGGDDPDATHGALIVSTVSWASSPGVHIDGGEGVGRVTKPGLPVPVGEAAINP
HHHHHHHCCCCCCCCCCCEEEEEEEHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCC
VPRQMIHEAVNEVLAQYGLHRGVNVVISVPGGEEIAKKTLNPRLGIMGGISILGTRGIVV
CHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCHHCCHHHHCCCCEEE
PFSTAAYRASIVQALQVAKANGCRHVVITTGGRSEKYAMQEYPHLPEEAFIEMGDFVGFT
ECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
LKQCKRLGIKMVSMVGMMGKFSKVAQGVMMVHSKSAPVDFGFLAALAEQAGASSALVAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHH
RGANTAAQVGDMMQEAGCMKFFELLCEACCQAALHEVGGGLTVATSIYTMNGQQLGKAVQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHC
TDGDDEVDRCGC
CCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA