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The map label for this gene is ypmQ [H]

Identifier: 138895322

GI number: 138895322

Start: 1758467

End: 1759072

Strand: Reverse

Name: ypmQ [H]

Synonym: GTNG_1666

Alternate gene names: 138895322

Gene position: 1759072-1758467 (Counterclockwise)

Preceding gene: 138895323

Following gene: 138895321

Centisome position: 49.55

GC content: 45.54

Gene sequence:

>606_bases
ATGCAAAACGATGAAGAAAAGGATGAGCCATCGATGTGGAAACGGATCATGATGATCGCAGCAGTTTGTTTGCTTGCTGC
ATGCGGAAAAACAATTCCAGATGCAAAAAACTGGCCGGTCGCTGATTTTACGTTCGTTGATCAGTCGGGTGAGCCGTTTG
GACTTCGCGATCTAAAAGGGAAGATATGGGTTGCTGACTTTGTTTTTACGAATTGTGAAACGGTTTGTCCACCAATGACC
GCCAATATGGCTAAACTGAAGAAGAAGGCGGAAGAAAAGGGGCTGGATGTCGAATTTGTTTCGTTCAGTGTCGACCCGGA
AGTAGACACGCCAGAAAAACTGACCGCCTATGCGAAACAGTTTACGGACGACCTAGCAAACTGGCATTTTTTGACCGGAT
ACAGTCAAACCGAAATTAATGAGCTGGCGCAAAAAAGCTTTAAAACGATCGTGCAAAAGCCGGCCAATGACGATCAAGTC
ATTCATGGCACGAACTTTTATCTAGTTGGGCCGGATGGTAATATTATCCAAACGTACAACGGTGTGCAGGACGTGCCGTA
CGACACGATTTTAGAGCATATCGAGATTTTGCAATCGTCGCGATAA

Upstream 100 bases:

>100_bases
ATCGAAACGCCCCTTGTTATTTCGATCCATACCACCTCTGGGGTGTTGGCGTTCATGTACGATATGGAAAAAGAGCCAAC
GGGGAGTAAAGCGAGTTTGA

Downstream 100 bases:

>100_bases
GGCAAAAACGGCTACAACCGTTTTGCCTTCTTTTCGTCTTTTCCCCTGTTGCGTGAGAAGGCAGGTGTCAAACATGAAAC
GATGGGGATTAATGATAATA

Product: lipoprotein

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQNDEEKDEPSMWKRIMMIAAVCLLAACGKTIPDAKNWPVADFTFVDQSGEPFGLRDLKGKIWVADFVFTNCETVCPPMT
ANMAKLKKKAEEKGLDVEFVSFSVDPEVDTPEKLTAYAKQFTDDLANWHFLTGYSQTEINELAQKSFKTIVQKPANDDQV
IHGTNFYLVGPDGNIIQTYNGVQDVPYDTILEHIEILQSSR

Sequences:

>Translated_201_residues
MQNDEEKDEPSMWKRIMMIAAVCLLAACGKTIPDAKNWPVADFTFVDQSGEPFGLRDLKGKIWVADFVFTNCETVCPPMT
ANMAKLKKKAEEKGLDVEFVSFSVDPEVDTPEKLTAYAKQFTDDLANWHFLTGYSQTEINELAQKSFKTIVQKPANDDQV
IHGTNFYLVGPDGNIIQTYNGVQDVPYDTILEHIEILQSSR
>Mature_201_residues
MQNDEEKDEPSMWKRIMMIAAVCLLAACGKTIPDAKNWPVADFTFVDQSGEPFGLRDLKGKIWVADFVFTNCETVCPPMT
ANMAKLKKKAEEKGLDVEFVSFSVDPEVDTPEKLTAYAKQFTDDLANWHFLTGYSQTEINELAQKSFKTIVQKPANDDQV
IHGTNFYLVGPDGNIIQTYNGVQDVPYDTILEHIEILQSSR

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22648; Mature: 22648

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNDEEKDEPSMWKRIMMIAAVCLLAACGKTIPDAKNWPVADFTFVDQSGEPFGLRDLKG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
KIWVADFVFTNCETVCPPMTANMAKLKKKAEEKGLDVEFVSFSVDPEVDTPEKLTAYAKQ
CEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH
FTDDLANWHFLTGYSQTEINELAQKSFKTIVQKPANDDQVIHGTNFYLVGPDGNIIQTYN
HHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCEEECCC
GVQDVPYDTILEHIEILQSSR
CCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNDEEKDEPSMWKRIMMIAAVCLLAACGKTIPDAKNWPVADFTFVDQSGEPFGLRDLKG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
KIWVADFVFTNCETVCPPMTANMAKLKKKAEEKGLDVEFVSFSVDPEVDTPEKLTAYAKQ
CEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH
FTDDLANWHFLTGYSQTEINELAQKSFKTIVQKPANDDQVIHGTNFYLVGPDGNIIQTYN
HHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCEEECCC
GVQDVPYDTILEHIEILQSSR
CCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]