Click here to switch to the map view.

The map label for this gene is ypmR [H]

Identifier: 138895321

GI number: 138895321

Start: 1757620

End: 1758444

Strand: Reverse

Name: ypmR [H]

Synonym: GTNG_1665

Alternate gene names: 138895321

Gene position: 1758444-1757620 (Counterclockwise)

Preceding gene: 138895322

Following gene: 138895320

Centisome position: 49.53

GC content: 51.76

Gene sequence:

>825_bases
TTGCCTTCTTTTCGTCTTTTCCCCTGTTGCGTGAGAAGGCAGGTGTCAAACATGAAACGATGGGGATTAATGATAATAGT
GAGTTTGTTTCTCGCCGGCTGCACCGCCTTTTCAGCCGTTGGACAGCCGGAGCAACCACAGGAAGCTGTCATCAAACAGA
CAGAGGCAAAGCCGCTGCCAAAAGACATCCATCTCGTCGCCTTAGGCGACTCGTTGACCGAAGGGGTTGGGGACGGCGAA
GGGAAAGGAGGGTATGTCGGCCGTCTTGTTCCGCTTCTTGCAGCAGAGGACCGAGTGCGGACCGTAACGGTGACAAATTT
GGGCAAGCGCGGCCGGCGCAGTGGGGAACTCGAGCCAGTTGTTGACGCCCACCAAGGAGAGCTTAAGCGGGCGGATTTGA
TTTTGTTGACGATTGGCGGTAACGATGTGATGAATGTAGTCCGTTCGCATTTTTTTGATTTGTCGTACGAGCGGTTTGCG
AAAGAAAGCAAGTTGTTTGCTGACCGGCTCGACCATTTGTTGATTTCACTGCGCATCGCCAATCCGGATGCGGTCATCGT
GCTTGTCGGTTTATACAACCCGTTTTCAACGACGCTACCGAACATCCCGGAAATCGATGACGTCATCGCCGAATGGAACA
AGGCAAGTCAGGTGGTGCTTTCCCGTTATGACCGGACGATCTTCGTTGATATTCAAGACATCTTTACTGATCGCGATGAG
CTTCTTCACCGTGATGAATTTCATCCGAACGCCGCGGGGTATGAACAAATCTCCACACGCGTATATCATGCGTTAAACGA
GCAAAAAGAGTGGTGGGTGAACTGA

Upstream 100 bases:

>100_bases
CAAACGTACAACGGTGTGCAGGACGTGCCGTACGACACGATTTTAGAGCATATCGAGATTTTGCAATCGTCGCGATAAGG
CAAAAACGGCTACAACCGTT

Downstream 100 bases:

>100_bases
TTGAAGAAAAACGGGTGAGAATAAGGAGTATGTCGTGATGAATTGGAAACGAGCGTTTTGGATATTGGCGGCCGTCAACG
CCGCTATCCTCATCTTTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MPSFRLFPCCVRRQVSNMKRWGLMIIVSLFLAGCTAFSAVGQPEQPQEAVIKQTEAKPLPKDIHLVALGDSLTEGVGDGE
GKGGYVGRLVPLLAAEDRVRTVTVTNLGKRGRRSGELEPVVDAHQGELKRADLILLTIGGNDVMNVVRSHFFDLSYERFA
KESKLFADRLDHLLISLRIANPDAVIVLVGLYNPFSTTLPNIPEIDDVIAEWNKASQVVLSRYDRTIFVDIQDIFTDRDE
LLHRDEFHPNAAGYEQISTRVYHALNEQKEWWVN

Sequences:

>Translated_274_residues
MPSFRLFPCCVRRQVSNMKRWGLMIIVSLFLAGCTAFSAVGQPEQPQEAVIKQTEAKPLPKDIHLVALGDSLTEGVGDGE
GKGGYVGRLVPLLAAEDRVRTVTVTNLGKRGRRSGELEPVVDAHQGELKRADLILLTIGGNDVMNVVRSHFFDLSYERFA
KESKLFADRLDHLLISLRIANPDAVIVLVGLYNPFSTTLPNIPEIDDVIAEWNKASQVVLSRYDRTIFVDIQDIFTDRDE
LLHRDEFHPNAAGYEQISTRVYHALNEQKEWWVN
>Mature_273_residues
PSFRLFPCCVRRQVSNMKRWGLMIIVSLFLAGCTAFSAVGQPEQPQEAVIKQTEAKPLPKDIHLVALGDSLTEGVGDGEG
KGGYVGRLVPLLAAEDRVRTVTVTNLGKRGRRSGELEPVVDAHQGELKRADLILLTIGGNDVMNVVRSHFFDLSYERFAK
ESKLFADRLDHLLISLRIANPDAVIVLVGLYNPFSTTLPNIPEIDDVIAEWNKASQVVLSRYDRTIFVDIQDIFTDRDEL
LHRDEFHPNAAGYEQISTRVYHALNEQKEWWVN

Specific function: Unknown

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 30796; Mature: 30664

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFRLFPCCVRRQVSNMKRWGLMIIVSLFLAGCTAFSAVGQPEQPQEAVIKQTEAKPLP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
KDIHLVALGDSLTEGVGDGEGKGGYVGRLVPLLAAEDRVRTVTVTNLGKRGRRSGELEPV
CCEEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC
VDAHQGELKRADLILLTIGGNDVMNVVRSHFFDLSYERFAKESKLFADRLDHLLISLRIA
CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEC
NPDAVIVLVGLYNPFSTTLPNIPEIDDVIAEWNKASQVVLSRYDRTIFVDIQDIFTDRDE
CCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCHHH
LLHRDEFHPNAAGYEQISTRVYHALNEQKEWWVN
HHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
PSFRLFPCCVRRQVSNMKRWGLMIIVSLFLAGCTAFSAVGQPEQPQEAVIKQTEAKPLP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
KDIHLVALGDSLTEGVGDGEGKGGYVGRLVPLLAAEDRVRTVTVTNLGKRGRRSGELEPV
CCEEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC
VDAHQGELKRADLILLTIGGNDVMNVVRSHFFDLSYERFAKESKLFADRLDHLLISLRIA
CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEC
NPDAVIVLVGLYNPFSTTLPNIPEIDDVIAEWNKASQVVLSRYDRTIFVDIQDIFTDRDE
CCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCHHH
LLHRDEFHPNAAGYEQISTRVYHALNEQKEWWVN
HHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3145906 [H]