Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 138895049

GI number: 138895049

Start: 1474020

End: 1474805

Strand: Direct

Name: yagI [H]

Synonym: GTNG_1387

Alternate gene names: 138895049

Gene position: 1474020-1474805 (Clockwise)

Preceding gene: 138895048

Following gene: 138895050

Centisome position: 41.52

GC content: 50.51

Gene sequence:

>786_bases
ATGGAAAAAGAGAATATCGTCAAGTCTGTCAGCCGGGCACTTCAGATTATTGACATCGTCAGCACGAAAAAAGATGGGCT
GGGTGTTACGGAAATCGCTAAACAAATGGACATTAACAAAAGCTCAGTGTACCGCATTTTAACGACGCTCGCCCAGCATG
GTTATATCGAGCAGCATCCGGAAACAGAGCGATATAAGCTCGGTTATAAGTTTTTAGAAATTAGCTCGAAATTGCTTGAT
TCGATCGATTTGCGCCAAGAGGCGCGGCCGTATTTGCGCCAGCTTGAAAAAGAAACGAACGAAGTCGTCCATCTCGTCGT
CTATGATCAAGGGGAAGTCATTTATATTGAAAAATTAGAGGGAACGGAAACGCTGCGCATGCATTCGAAAGTCGGCAAGC
GGGCGCCGATGCATTGTACAGCGGTCGGCAAGGCGATTTTAGCTTATTTGCCGCCAACAGTTACCGCAGAGATCATCGAT
CGGAAAGGGCTGCCCAAGCATACCGATTTGACGATCACGGACCGCGAGGCGTTTTTCCGTGAGCTCGATTCCGTCCGGCA
AAACGGATATGCACTCGATTTGGAAGAAAACGAGTATGGCATCCGTTGTGTGGCTGTTCCGATTTTTGATTACACCGGCA
GTGTTGTTGCTGCTGTCAGCGTCTCCGGCCCGACGATTCGCATGACGGATGACCGTATCGCCGGGCTCGCTATGCGCATG
CGCCAGATCGGCAAGGAACTCTCTGCTCGGCTTGGCCATCGATCGGCCCATTCCGTCCAGCTGTAA

Upstream 100 bases:

>100_bases
CACGGCGTCGCCTTCTGTGCCCGCCGCTGCCGAGGCGCCTGCAAACGCCCGGCCGTTCGTGTATAATGGCGAGTGGAGAG
AACAAATCGAGGTGAACAAA

Downstream 100 bases:

>100_bases
CAGCTGGGCGTTTTTTTCTGTAGCCGGCTATAGCGTCGACAGTACATCATGGCGAGGCATGCCATCTAATAGGTGATAAA
CGTTGTATCAAAAACTCCAC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MEKENIVKSVSRALQIIDIVSTKKDGLGVTEIAKQMDINKSSVYRILTTLAQHGYIEQHPETERYKLGYKFLEISSKLLD
SIDLRQEARPYLRQLEKETNEVVHLVVYDQGEVIYIEKLEGTETLRMHSKVGKRAPMHCTAVGKAILAYLPPTVTAEIID
RKGLPKHTDLTITDREAFFRELDSVRQNGYALDLEENEYGIRCVAVPIFDYTGSVVAAVSVSGPTIRMTDDRIAGLAMRM
RQIGKELSARLGHRSAHSVQL

Sequences:

>Translated_261_residues
MEKENIVKSVSRALQIIDIVSTKKDGLGVTEIAKQMDINKSSVYRILTTLAQHGYIEQHPETERYKLGYKFLEISSKLLD
SIDLRQEARPYLRQLEKETNEVVHLVVYDQGEVIYIEKLEGTETLRMHSKVGKRAPMHCTAVGKAILAYLPPTVTAEIID
RKGLPKHTDLTITDREAFFRELDSVRQNGYALDLEENEYGIRCVAVPIFDYTGSVVAAVSVSGPTIRMTDDRIAGLAMRM
RQIGKELSARLGHRSAHSVQL
>Mature_261_residues
MEKENIVKSVSRALQIIDIVSTKKDGLGVTEIAKQMDINKSSVYRILTTLAQHGYIEQHPETERYKLGYKFLEISSKLLD
SIDLRQEARPYLRQLEKETNEVVHLVVYDQGEVIYIEKLEGTETLRMHSKVGKRAPMHCTAVGKAILAYLPPTVTAEIID
RKGLPKHTDLTITDREAFFRELDSVRQNGYALDLEENEYGIRCVAVPIFDYTGSVVAAVSVSGPTIRMTDDRIAGLAMRM
RQIGKELSARLGHRSAHSVQL

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=248, Percent_Identity=39.9193548387097, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1788131, Length=247, Percent_Identity=35.6275303643725, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI87082359, Length=248, Percent_Identity=33.0645161290323, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1789999, Length=248, Percent_Identity=33.0645161290323, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1786715, Length=248, Percent_Identity=28.2258064516129, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1788581, Length=260, Percent_Identity=28.8461538461538, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790752, Length=226, Percent_Identity=27.4336283185841, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29442; Mature: 29442

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKENIVKSVSRALQIIDIVSTKKDGLGVTEIAKQMDINKSSVYRILTTLAQHGYIEQHP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
ETERYKLGYKFLEISSKLLDSIDLRQEARPYLRQLEKETNEVVHLVVYDQGEVIYIEKLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECC
GTETLRMHSKVGKRAPMHCTAVGKAILAYLPPTVTAEIIDRKGLPKHTDLTITDREAFFR
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEHHHHHHH
ELDSVRQNGYALDLEENEYGIRCVAVPIFDYTGSVVAAVSVSGPTIRMTDDRIAGLAMRM
HHHHHHHCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCEEEECCHHHHHHHHHH
RQIGKELSARLGHRSAHSVQL
HHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEKENIVKSVSRALQIIDIVSTKKDGLGVTEIAKQMDINKSSVYRILTTLAQHGYIEQHP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
ETERYKLGYKFLEISSKLLDSIDLRQEARPYLRQLEKETNEVVHLVVYDQGEVIYIEKLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECC
GTETLRMHSKVGKRAPMHCTAVGKAILAYLPPTVTAEIIDRKGLPKHTDLTITDREAFFR
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEHHHHHHH
ELDSVRQNGYALDLEENEYGIRCVAVPIFDYTGSVVAAVSVSGPTIRMTDDRIAGLAMRM
HHHHHHHCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCEEEECCHHHHHHHHHH
RQIGKELSARLGHRSAHSVQL
HHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]