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The map label for this gene is ompA [C]

Identifier: 138894940

GI number: 138894940

Start: 1354503

End: 1355174

Strand: Direct

Name: ompA [C]

Synonym: GTNG_1278

Alternate gene names: 138894940

Gene position: 1354503-1355174 (Clockwise)

Preceding gene: 138894939

Following gene: 138894941

Centisome position: 38.15

GC content: 42.86

Gene sequence:

>672_bases
ATGAAATACCGGAGACGGACAGAAGTAAATTATTGGATGTCCTATGCGGATTTAATGAGCGCCATGTTGATGGTGTTTGC
CTTGCTGTTGACGTTTGTCATTCTCGACTACCGCGAGTTGCTTGAAGAGAAAGAAAAGAAAATCGAACAAGTCGTCAGTG
TCAAATCAGAAATTATTCGAGCGCTGACAGAGGCGTTTAAACAGTCGAATATGACGATTGAAATTGACCAGCAAACAGGA
GCCATCCGTTTTCCCGGCAGCATTTTATTTGAATCCGATTCGGCGGAAATCTCTCCGGAAGGGAAGAAGTTTTTGCAGCA
ATTCATCCCAAAATATATGGGAATTTTATTGCAGGATCGCTTTCAAAACGAAATTTCGAGCATCATTATCGAAGGGCATA
CCGACCGGAATGGAACGTACATGTATAATATGTCATTATCACAGCGCCGGGCGTATGCGGTGTTAGAATATATTTATAGT
AAAGAATTCCCTAACTTTAAAGAACGGGAGTTGTCGAAAAAATATATTACCGCAAATGGCCGGAGCTTCAGTAGTCCGCT
GACAGACGAAAATGGCAAGTATGATCCTGACCGCTCGCGACGAGTTGAGTTCCTCTTTCGCCTCAAGGATGATGAGGCAA
TTAAGGCCATTGAAAAGTTGGTGAACGAATGA

Upstream 100 bases:

>100_bases
GCGGACTCGTTTATCAGTTTAGTGAAGTGCAGTCAGACTTTATCGACAACTTGGAAGACCTGGTGGATCATTTCGATAAA
TGGAAAGCAGGGGCTTCGTC

Downstream 100 bases:

>100_bases
AGTATGAGTATGAACCGGTATTGTTGAAAAGGTGGTTGCGCGAGCCGCGCCCACCTCTTTTGGAGAAAACAATAGAAAAC
AGCAACGAGAAATATCGAGG

Product: putative periplasmic protein

Products: NA

Alternate protein names: OmpA/MotB Domain Protein; Periplasmic Protein; Outer Membrane Protein; Ompa/Motb Domain Protein; OmpA/MotB Domain-Containing Protein; Outer Membrane Protein Peptidoglycan-Associatedprotein; OmpA Family Protein

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MKYRRRTEVNYWMSYADLMSAMLMVFALLLTFVILDYRELLEEKEKKIEQVVSVKSEIIRALTEAFKQSNMTIEIDQQTG
AIRFPGSILFESDSAEISPEGKKFLQQFIPKYMGILLQDRFQNEISSIIIEGHTDRNGTYMYNMSLSQRRAYAVLEYIYS
KEFPNFKERELSKKYITANGRSFSSPLTDENGKYDPDRSRRVEFLFRLKDDEAIKAIEKLVNE

Sequences:

>Translated_223_residues
MKYRRRTEVNYWMSYADLMSAMLMVFALLLTFVILDYRELLEEKEKKIEQVVSVKSEIIRALTEAFKQSNMTIEIDQQTG
AIRFPGSILFESDSAEISPEGKKFLQQFIPKYMGILLQDRFQNEISSIIIEGHTDRNGTYMYNMSLSQRRAYAVLEYIYS
KEFPNFKERELSKKYITANGRSFSSPLTDENGKYDPDRSRRVEFLFRLKDDEAIKAIEKLVNE
>Mature_223_residues
MKYRRRTEVNYWMSYADLMSAMLMVFALLLTFVILDYRELLEEKEKKIEQVVSVKSEIIRALTEAFKQSNMTIEIDQQTG
AIRFPGSILFESDSAEISPEGKKFLQQFIPKYMGILLQDRFQNEISSIIIEGHTDRNGTYMYNMSLSQRRAYAVLEYIYS
KEFPNFKERELSKKYITANGRSFSSPLTDENGKYDPDRSRRVEFLFRLKDDEAIKAIEKLVNE

Specific function: Required For The Action Of Colicins K And L And For The Stabilization Of Mating Aggregates In Conjugation. Serves As A Receptor For A Number Of T-Even Like Phages. Also Acts As A Porin With Low Permeability That Allows Slow Penetration Of Small Solutes.

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26249; Mature: 26249

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRRRTEVNYWMSYADLMSAMLMVFALLLTFVILDYRELLEEKEKKIEQVVSVKSEIIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAFKQSNMTIEIDQQTGAIRFPGSILFESDSAEISPEGKKFLQQFIPKYMGILLQDR
HHHHHHHHCCCEEEEECCCCCEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FQNEISSIIIEGHTDRNGTYMYNMSLSQRRAYAVLEYIYSKEFPNFKERELSKKYITANG
HHHHHHHEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
RSFSSPLTDENGKYDPDRSRRVEFLFRLKDDEAIKAIEKLVNE
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKYRRRTEVNYWMSYADLMSAMLMVFALLLTFVILDYRELLEEKEKKIEQVVSVKSEIIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAFKQSNMTIEIDQQTGAIRFPGSILFESDSAEISPEGKKFLQQFIPKYMGILLQDR
HHHHHHHHCCCEEEEECCCCCEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
FQNEISSIIIEGHTDRNGTYMYNMSLSQRRAYAVLEYIYSKEFPNFKERELSKKYITANG
HHHHHHHEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
RSFSSPLTDENGKYDPDRSRRVEFLFRLKDDEAIKAIEKLVNE
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA