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The map label for this gene is ybbB [H]

Identifier: 138894888

GI number: 138894888

Start: 1289029

End: 1290504

Strand: Direct

Name: ybbB [H]

Synonym: GTNG_1224

Alternate gene names: 138894888

Gene position: 1289029-1290504 (Clockwise)

Preceding gene: 138894887

Following gene: 138894889

Centisome position: 36.31

GC content: 54.61

Gene sequence:

>1476_bases
ATGAAATTGGTCATTGCCGAACGGGATCACAACGAACGGGAGGCGATCCGCTGGCTTGTGTCTGCGTATTCACTGCCGAT
TGAGCAAGTGTACACGGCGGCCACGGTGGAGGAGATGATGGCGCTTCTAGAGCGGGAGGCGCCGGAGCTATTGTATGTCG
AATTAGATATGATTCCGTATGAACAATGGGGGAAAGCGACGTCTTGCATCCGCTTGTTTTGCCAGCGGGTGATTGCGGTG
ACCGCCGAGGCGACATTCGCGCGGGCAAAACAAGCCATCGATTTACAATGCGTCGATTTGCTTGTGAAGCCGCTTGAGCC
CGCCAAACTGAAACAAGCGTTGAGAACGGCGGCTTCGCTTTCCGCTGGCGGTGAACGCCCCTGTCTTGATGCCCATTTTG
ACGATTATCGCCCGTTATTTTACGAGGACTTTGCTGACGTCTCCTTCCATGTATGGCTGGTGCAAGCGGAACAGCCTTCC
CTATCTGCTGAGGTGGTTCGCTTTTTAACGAGCTATCCGTTTCGCCGGCGTGCGCGCGTATTACCGTTGACTCATATGGC
GGTGTGCCTTTTTCCCGAGCTGCCGGGCAATGGAAAGGAAGAAGCATGGAAGATGATGCGCGATTGGGAGGAGGAACATC
ATGAACCGTTGGCGGTGGTCATCATGCCACCGGATGGTCAGCAATCGGTGCGTATGCGCTATCAAGCTGCCCGCCGGCTG
CTCGAGACGACATTTTTTATCGGCTACCAGCAAGTGATTGCTCCAGCGCCTGAATATGAACGGTGGCGTGAGTTGGATCC
GTTTTTGACGCCGGAAGAGCAACGACAATGGGTTGAAATGCTTGAGCAGTTTGACCACGAGGCGGTCAAACGATGGTTGC
AGAATGAATTTTCCCATTGGACGCCGCCGTTTCCGAGCCCAGAGATGGTGCGCACGCGGCTGACGAGCATCTTGGCGCAA
ATCCGGCGATTTATGAAAACATACCGTCTTGACCACGGCACGATGGAATGTGAGTACATGCGTCTATTTCAAGACATTTT
GTACAATCCTGTGCTGTATCGTATCGTCCAAGAATTGATTTTGTTTTTATACCGGCTGCTCCACGAAGCGAGGAGGGCTG
AGGAAGGTGCGCGTGTCGACGCCATCGAACGGGGGCTTCGCTATATGGAAACGCATTTTCGCGATCCGTCGCTCACGCTG
GAGCGGACCGCGGCAGCAGCCGGACGCAGCCCTGCGTATTTCAGCCATTTGTTGTCGACAAAGCGCGGTGTGACGTTTCG
CCAATGGCTGACGAAACGGCGACTCGAGGAGGCAAAGCGGTTGCTTCGACAAACCGACTTGTCTGTGAAAGAAATCGCCG
AACAGACTGGGTTTCGGACAGCTCATTATTTGACGCGCGTCTTTAAAGCCGAACTGAACCGGACGCCGACCGCCTACCGT
GATGAACAACGGCTCCATCGGTCATCACCGCAGTAG

Upstream 100 bases:

>100_bases
CCGCTCGTTGATGAAGGCGGAAAAACAGTGGCGTTAGCCGCCGCCTTCTGCATGGAAGCGCTTCTTCATTTTCGACGTTT
GCAACCGAGGCGGTGAGAAG

Downstream 100 bases:

>100_bases
ACAGTTTTTTCGAAAGAAATGAACATATATCAAAAGAAATGGACGGATGTGGTATAAAGAAATATGAAATTTCTAAAAAA
ACGGATCAACTTTAAAAGAA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKLVIAERDHNEREAIRWLVSAYSLPIEQVYTAATVEEMMALLEREAPELLYVELDMIPYEQWGKATSCIRLFCQRVIAV
TAEATFARAKQAIDLQCVDLLVKPLEPAKLKQALRTAASLSAGGERPCLDAHFDDYRPLFYEDFADVSFHVWLVQAEQPS
LSAEVVRFLTSYPFRRRARVLPLTHMAVCLFPELPGNGKEEAWKMMRDWEEEHHEPLAVVIMPPDGQQSVRMRYQAARRL
LETTFFIGYQQVIAPAPEYERWRELDPFLTPEEQRQWVEMLEQFDHEAVKRWLQNEFSHWTPPFPSPEMVRTRLTSILAQ
IRRFMKTYRLDHGTMECEYMRLFQDILYNPVLYRIVQELILFLYRLLHEARRAEEGARVDAIERGLRYMETHFRDPSLTL
ERTAAAAGRSPAYFSHLLSTKRGVTFRQWLTKRRLEEAKRLLRQTDLSVKEIAEQTGFRTAHYLTRVFKAELNRTPTAYR
DEQRLHRSSPQ

Sequences:

>Translated_491_residues
MKLVIAERDHNEREAIRWLVSAYSLPIEQVYTAATVEEMMALLEREAPELLYVELDMIPYEQWGKATSCIRLFCQRVIAV
TAEATFARAKQAIDLQCVDLLVKPLEPAKLKQALRTAASLSAGGERPCLDAHFDDYRPLFYEDFADVSFHVWLVQAEQPS
LSAEVVRFLTSYPFRRRARVLPLTHMAVCLFPELPGNGKEEAWKMMRDWEEEHHEPLAVVIMPPDGQQSVRMRYQAARRL
LETTFFIGYQQVIAPAPEYERWRELDPFLTPEEQRQWVEMLEQFDHEAVKRWLQNEFSHWTPPFPSPEMVRTRLTSILAQ
IRRFMKTYRLDHGTMECEYMRLFQDILYNPVLYRIVQELILFLYRLLHEARRAEEGARVDAIERGLRYMETHFRDPSLTL
ERTAAAAGRSPAYFSHLLSTKRGVTFRQWLTKRRLEEAKRLLRQTDLSVKEIAEQTGFRTAHYLTRVFKAELNRTPTAYR
DEQRLHRSSPQ
>Mature_491_residues
MKLVIAERDHNEREAIRWLVSAYSLPIEQVYTAATVEEMMALLEREAPELLYVELDMIPYEQWGKATSCIRLFCQRVIAV
TAEATFARAKQAIDLQCVDLLVKPLEPAKLKQALRTAASLSAGGERPCLDAHFDDYRPLFYEDFADVSFHVWLVQAEQPS
LSAEVVRFLTSYPFRRRARVLPLTHMAVCLFPELPGNGKEEAWKMMRDWEEEHHEPLAVVIMPPDGQQSVRMRYQAARRL
LETTFFIGYQQVIAPAPEYERWRELDPFLTPEEQRQWVEMLEQFDHEAVKRWLQNEFSHWTPPFPSPEMVRTRLTSILAQ
IRRFMKTYRLDHGTMECEYMRLFQDILYNPVLYRIVQELILFLYRLLHEARRAEEGARVDAIERGLRYMETHFRDPSLTL
ERTAAAAGRSPAYFSHLLSTKRGVTFRQWLTKRRLEEAKRLLRQTDLSVKEIAEQTGFRTAHYLTRVFKAELNRTPTAYR
DEQRLHRSSPQ

Specific function: Unknown

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=84, Percent_Identity=41.6666666666667, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 57843; Mature: 57843

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVIAERDHNEREAIRWLVSAYSLPIEQVYTAATVEEMMALLEREAPELLYVELDMIPY
CEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
EQWGKATSCIRLFCQRVIAVTAEATFARAKQAIDLQCVDLLVKPLEPAKLKQALRTAASL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SAGGERPCLDAHFDDYRPLFYEDFADVSFHVWLVQAEQPSLSAEVVRFLTSYPFRRRARV
CCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCHHHCCCC
LPLTHMAVCLFPELPGNGKEEAWKMMRDWEEEHHEPLAVVIMPPDGQQSVRMRYQAARRL
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
LETTFFIGYQQVIAPAPEYERWRELDPFLTPEEQRQWVEMLEQFDHEAVKRWLQNEFSHW
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPPFPSPEMVRTRLTSILAQIRRFMKTYRLDHGTMECEYMRLFQDILYNPVLYRIVQELI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LFLYRLLHEARRAEEGARVDAIERGLRYMETHFRDPSLTLERTAAAAGRSPAYFSHLLST
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHH
KRGVTFRQWLTKRRLEEAKRLLRQTDLSVKEIAEQTGFRTAHYLTRVFKAELNRTPTAYR
HCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH
DEQRLHRSSPQ
HHHHHHCCCCC
>Mature Secondary Structure
MKLVIAERDHNEREAIRWLVSAYSLPIEQVYTAATVEEMMALLEREAPELLYVELDMIPY
CEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
EQWGKATSCIRLFCQRVIAVTAEATFARAKQAIDLQCVDLLVKPLEPAKLKQALRTAASL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SAGGERPCLDAHFDDYRPLFYEDFADVSFHVWLVQAEQPSLSAEVVRFLTSYPFRRRARV
CCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCHHHCCCC
LPLTHMAVCLFPELPGNGKEEAWKMMRDWEEEHHEPLAVVIMPPDGQQSVRMRYQAARRL
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
LETTFFIGYQQVIAPAPEYERWRELDPFLTPEEQRQWVEMLEQFDHEAVKRWLQNEFSHW
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPPFPSPEMVRTRLTSILAQIRRFMKTYRLDHGTMECEYMRLFQDILYNPVLYRIVQELI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LFLYRLLHEARRAEEGARVDAIERGLRYMETHFRDPSLTLERTAAAAGRSPAYFSHLLST
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHH
KRGVTFRQWLTKRRLEEAKRLLRQTDLSVKEIAEQTGFRTAHYLTRVFKAELNRTPTAYR
HCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH
DEQRLHRSSPQ
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]