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The map label for this gene is ccdB [H]

Identifier: 138894859

GI number: 138894859

Start: 1265458

End: 1265814

Strand: Direct

Name: ccdB [H]

Synonym: GTNG_1195

Alternate gene names: 138894859

Gene position: 1265458-1265814 (Clockwise)

Preceding gene: 138894858

Following gene: 138894860

Centisome position: 35.64

GC content: 50.7

Gene sequence:

>357_bases
ATGGCTGCCATTTTGGTTGTCGATGATGCGAATTTTATGAGGGTGACGTTAGCGCGCATATTGCAAAAAGCGAACCATAC
CGTAGCCGGTGAGGCGAAAAACGGTAAAGAGGCGGTTGAACTGTATCGCCGGCTGCATCCGGAACTGGTCATCATGGATA
TTACCATGCCAGTCATGAACGGAATCGAAGCTGTACGGGCGATCAAGGAAATCGATCCAGGGGCGAAAATCATTATTTGT
TCGGCGTTAGGGCAGCAGCGCATGATCGTTGAGGCGATTGAAGCTGGCGCTGCTGACTTTATTGTCAAGCCGTTTGAAGA
AAGCGATGTGCTCGAGGCGGTGGCACGCCTTTTATAG

Upstream 100 bases:

>100_bases
ATACCACAAGCATATTTGGTGGATTTACCGGCTTTTAGCGCAGCTGAAGCCGCCTTTTGTGCTGCCGGAATAGAAAACCG
TTCAGGGGGACGTTGGAAAG

Downstream 100 bases:

>100_bases
ACGGCTGTCAGCGCAAGGGGGGGAGACCATAGATCGAAAGCTCACTCTTGTTCTTTTCTTACCGATAGGAGGAGGGAGCA
AGAACTTCCCGGCGCAGCTG

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAAILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMNGIEAVRAIKEIDPGAKIIIC
SALGQQRMIVEAIEAGAADFIVKPFEESDVLEAVARLL

Sequences:

>Translated_118_residues
MAAILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMNGIEAVRAIKEIDPGAKIIIC
SALGQQRMIVEAIEAGAADFIVKPFEESDVLEAVARLL
>Mature_117_residues
AAILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMNGIEAVRAIKEIDPGAKIIICS
ALGQQRMIVEAIEAGAADFIVKPFEESDVLEAVARLL

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=35.8490566037736, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787473, Length=114, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1790299, Length=112, Percent_Identity=35.7142857142857, Blast_Score=60, Evalue=3e-11,
Organism=Escherichia coli, GI1788222, Length=115, Percent_Identity=32.1739130434783, Blast_Score=60, Evalue=5e-11,
Organism=Escherichia coli, GI1786784, Length=115, Percent_Identity=33.0434782608696, Blast_Score=59, Evalue=7e-11,
Organism=Escherichia coli, GI1790437, Length=103, Percent_Identity=33.9805825242718, Blast_Score=59, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 12881; Mature: 12750

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMN
CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHH
GIEAVRAIKEIDPGAKIIICSALGQQRMIVEAIEAGAADFIVKPFEESDVLEAVARLL
HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHC
>Mature Secondary Structure 
AAILVVDDANFMRVTLARILQKANHTVAGEAKNGKEAVELYRRLHPELVIMDITMPVMN
EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHH
GIEAVRAIKEIDPGAKIIICSALGQQRMIVEAIEAGAADFIVKPFEESDVLEAVARLL
HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9068642; 8969507; 9384377 [H]