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The map label for this gene is rsmB [H]

Identifier: 138894694

GI number: 138894694

Start: 1095021

End: 1096355

Strand: Direct

Name: rsmB [H]

Synonym: GTNG_1026

Alternate gene names: 138894694

Gene position: 1095021-1096355 (Clockwise)

Preceding gene: 138894693

Following gene: 138894695

Centisome position: 30.84

GC content: 57.38

Gene sequence:

>1335_bases
ATGAACGTACGTGAACTTGCTTTAGACACGCTGTTGGCCATCGAACAAAAAGGGGCTTACAGCCATTTGCAACTGAACAA
CGCCATTCAAAAAGGGCGTCTTGACGGGCGCGATGCGGCGTTGCTGACAGAAATCGTGTACGGCACCATACAGCGGCGCG
ATACGCTCGATTATTATTTGACACCGTTTTTGCGCAAGGCGCGCCGGCTTGAGCAATGGGTGCGCGTGCTTCTGCGGCTG
ACGCTGTACCAAATGGTATATTTAGATCGCGTTCCGGATCACGCCGCCATCTTTGAAGCGGTGGAAATCGCCAAACGGCG
CGGCCATCGCGGCATCGCTTCGCTTGTGAACGGTGTCTTGCGCACCATTGGCCGCGAGGGGCTGCCATCGCTTGATGCCA
TTAACGATTCTGCAAAGCGGCTCGCCGTCGCCACAAGCCATCCAGAATGGCTTGTCCGTCGCTGGATCGAGCAATACGGT
CCTGAGGAGACGGCGCGCATGTGCGAGACGAATTTGCGTCCGCCACAATCGACCGCCCGCGTCAATCGGATGCGGGCGAC
GGTGGAGGAAGCGCTCGAGCGGCTTGGCAGCGAAGGAGTGAAGGCTGTTCGAGGTCTTCTTGCTCCGGAGGCCATCCGAG
CCGAAAACGGGAATTTCGCTCATACGGAGGCATTTCACTCCGGTTGGCTGACGATCCAAGATGAAAGCTCGATGCTCGTC
GCCCGCGCGCTCGACCCGGCGGCAGGGGAACGGGTGCTCGACTGCTGTGCGGCGCCGGGGGGGAAAACGACCCATATCGC
TGAACGGATGGACGGCCGCGGCGAAGTGGTTGCTGTTGATATTCACGAGCATAAAGTGAAGCTCATTGAACAACAAGCGC
AAAGGCTCGGCCTTGACAATATCAGGACGCTCGCCCTTGATAGCCGCCGGCTCGGTGAGTGGTTCGCTCCTGAGTCGTTT
GACCGTATTTTAGTCGATGCACCGTGCACCGGGTTTGGCGTCATCCGCCGCAAACCGGAGATCAAGTACACAAAAGGGAA
CGATGATGTCGCGGCGCTTGTTGAGATTCAACAAGCCATTTTGCGGGCGGCTGCCCCGCTCTTGAAAAAAGGGGGCACGC
TTGTCTACAGCACGTGTACGATCGAGCGTGAAGAAAATGAAGAAGCCATCGCCCGCTTTTTGGCCGATCATCCGGATTTT
TCGCTCGACGACCGTCTCGTCGAGCGGCTGCCGGATGCGGTACGGCCGTATGTTCAAAAAGGCATGCTGCAATTGCTGCC
GCATTATTTTGATTCCGACGGGTTTTTTATCGCCCGGTTACGAAAGAAGGGGTAG

Upstream 100 bases:

>100_bases
ACTGAATTGCAGCCGGCCGGCAAAAAGCGAATGGCCGCCAGCGAGTTTTTGCGCGGTGCTGGCAGCCGGCTTGCGGTCGG
CACGAAGCTAGGAGAGAACA

Downstream 100 bases:

>100_bases
TAAGTGGAAATGACGAATACGGCTGCCCGCCGGTCCACCGGCGAAGCGCAGCTGCTACCGTTGCCGTCGATTTATTCACT
GACGCTTGATGAATTGAAGG

Product: 16S rRNA m(5)C 967 methyltransferase

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQRRDTLDYYLTPFLRKARRLEQWVRVLLRL
TLYQMVYLDRVPDHAAIFEAVEIAKRRGHRGIASLVNGVLRTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYG
PEETARMCETNLRPPQSTARVNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDESSMLV
ARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDNIRTLALDSRRLGEWFAPESF
DRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVEIQQAILRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDF
SLDDRLVERLPDAVRPYVQKGMLQLLPHYFDSDGFFIARLRKKG

Sequences:

>Translated_444_residues
MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQRRDTLDYYLTPFLRKARRLEQWVRVLLRL
TLYQMVYLDRVPDHAAIFEAVEIAKRRGHRGIASLVNGVLRTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYG
PEETARMCETNLRPPQSTARVNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDESSMLV
ARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDNIRTLALDSRRLGEWFAPESF
DRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVEIQQAILRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDF
SLDDRLVERLPDAVRPYVQKGMLQLLPHYFDSDGFFIARLRKKG
>Mature_444_residues
MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQRRDTLDYYLTPFLRKARRLEQWVRVLLRL
TLYQMVYLDRVPDHAAIFEAVEIAKRRGHRGIASLVNGVLRTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYG
PEETARMCETNLRPPQSTARVNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDESSMLV
ARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDNIRTLALDSRRLGEWFAPESF
DRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVEIQQAILRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDF
SLDDRLVERLPDAVRPYVQKGMLQLLPHYFDSDGFFIARLRKKG

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=185, Percent_Identity=45.4054054054054, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI76150625, Length=367, Percent_Identity=29.9727520435967, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI76150623, Length=367, Percent_Identity=29.9727520435967, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI11545785, Length=258, Percent_Identity=27.5193798449612, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI23199998, Length=234, Percent_Identity=29.4871794871795, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI270288816, Length=234, Percent_Identity=29.4871794871795, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI8922322, Length=234, Percent_Identity=29.4871794871795, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI270288818, Length=238, Percent_Identity=28.9915966386555, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI301336155, Length=198, Percent_Identity=31.3131313131313, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI39995082, Length=198, Percent_Identity=31.3131313131313, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI40316918, Length=168, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI2367212, Length=446, Percent_Identity=34.9775784753363, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI87081985, Length=277, Percent_Identity=34.6570397111913, Blast_Score=158, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI17536757, Length=242, Percent_Identity=35.9504132231405, Blast_Score=127, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71998419, Length=304, Percent_Identity=29.9342105263158, Blast_Score=102, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI115534021, Length=238, Percent_Identity=31.5126050420168, Blast_Score=95, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI25143471, Length=195, Percent_Identity=34.8717948717949, Blast_Score=91, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324268, Length=344, Percent_Identity=29.0697674418605, Blast_Score=134, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6319447, Length=298, Percent_Identity=26.8456375838926, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324306, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI22024126, Length=240, Percent_Identity=34.1666666666667, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24668781, Length=234, Percent_Identity=35.4700854700855, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI21356513, Length=234, Percent_Identity=35.4700854700855, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI21355201, Length=278, Percent_Identity=28.0575539568345, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI21356579, Length=227, Percent_Identity=29.0748898678414, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI19920494, Length=169, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 49924; Mature: 49924

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQRRDTLDYYL
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHH
TPFLRKARRLEQWVRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKRRGHRGIASLVNGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
RTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYGPEETARMCETNLRPPQSTAR
HHHCCCCCCCHHHCCCHHHHEEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHH
VNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDESSMLV
HHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCEEEECCCCEEH
ARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDN
HHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCH
IRTLALDSRRLGEWFAPESFDRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVEIQQAI
HHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHH
LRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDFSLDDRLVERLPDAVRPYVQK
HHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHH
GMLQLLPHYFDSDGFFIARLRKKG
HHHHHHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure
MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQRRDTLDYYL
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHH
TPFLRKARRLEQWVRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKRRGHRGIASLVNGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
RTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYGPEETARMCETNLRPPQSTAR
HHHCCCCCCCHHHCCCHHHHEEEECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHH
VNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDESSMLV
HHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCEEEECCCCEEH
ARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQRLGLDN
HHHCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCH
IRTLALDSRRLGEWFAPESFDRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVEIQQAI
HHHHHCCCHHHCCCCCCCCCCEEEEECCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHH
LRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDFSLDDRLVERLPDAVRPYVQK
HHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHH
GMLQLLPHYFDSDGFFIARLRKKG
HHHHHHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]