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The map label for this gene is yisR [H]

Identifier: 138894283

GI number: 138894283

Start: 675200

End: 676060

Strand: Direct

Name: yisR [H]

Synonym: GTNG_0609

Alternate gene names: 138894283

Gene position: 675200-676060 (Clockwise)

Preceding gene: 138894281

Following gene: 138894285

Centisome position: 19.02

GC content: 49.01

Gene sequence:

>861_bases
ATGGACTATGTCACGTTTTCGTTGCCACCTTTGCCTGTGTTCATAAAAGGGGCGGAAAGTGTATTTCCAGAAGGAAAACG
TCATTTCCGCCGAACGTTTTCGGTCTTCGACTTGCTTTATGTCAAACAAGGCTGCTTATATATGACGGAAGACGGACGTG
AATTTGCCGTTGGCAGTGGACAATATTTACTGTTGATCCCGGGAAGGGAACATTACGGGCATCGTCCGTGCAGTGAACGG
ACGGAGTATGTTTGGCTCCATTTTTTGTTGACGGATTATGAAGTGGTTGCTGATCACCCAGTCAGTCGGCAAACAGTGAT
GGAAAAAGAGGCGACGTACACGGAACCGATCCAATATCGGCTCGCCATTCGCCAATATGGGGAATTAAAACAACGAGAGA
GGGCTGAACAGCTGCTCAACCAGATTGTTGAGCCAAACGTCGATCGGGATATCGAGCGGCCGCTGCGGCAGTTGCTTCTG
TTTGTCGAATTCCTTTGGCACTTGCAAAAGCAAGAGCTTTCTGTTCCAAACGCTTCAGAACAGGTCAGCGCTGCGGCGGT
GGCGTATATCGAAAACCATTTCTGCGAGCCAGTGACATTGGAGAGAGTTGCTCGCGAGCTTCGCTTTCATCCGGATTACG
TCACTCGGTGCATGCAAAGAACGCTCGGGATGGGCTTTAGCCATTATTTGGCGTACTACCGATTGTCAAAGGCGAAACAA
TGGTTGGCTGAAACAAATGAAACGGTCGAGGCCATCGCCAAACGAGTTGGCATTGATGACAGCGCTTATTTCTCGCGTTT
ATTTAAAAAAATGGAAGGGATGACGCCGACTGAGTATCGGCGTATAGCCCAACGCGTATAA

Upstream 100 bases:

>100_bases
CGACTAGAACGATATATCAAGTTTAGCCAGTTTGTTGCATAATGGAAAGAGAGAGAAACGATTTCACTTGCATTTTTCCG
ACAAGAAAAGAGGGATGACG

Downstream 100 bases:

>100_bases
CACCGGTGCAGCGGCTGCACCGGTGTTCATATATTGGCTGCTATTATGATTGTCTATGAAACAGGTCTACCAATGTTCTA
TTGCATAAAGTACAAACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MDYVTFSLPPLPVFIKGAESVFPEGKRHFRRTFSVFDLLYVKQGCLYMTEDGREFAVGSGQYLLLIPGREHYGHRPCSER
TEYVWLHFLLTDYEVVADHPVSRQTVMEKEATYTEPIQYRLAIRQYGELKQRERAEQLLNQIVEPNVDRDIERPLRQLLL
FVEFLWHLQKQELSVPNASEQVSAAAVAYIENHFCEPVTLERVARELRFHPDYVTRCMQRTLGMGFSHYLAYYRLSKAKQ
WLAETNETVEAIAKRVGIDDSAYFSRLFKKMEGMTPTEYRRIAQRV

Sequences:

>Translated_286_residues
MDYVTFSLPPLPVFIKGAESVFPEGKRHFRRTFSVFDLLYVKQGCLYMTEDGREFAVGSGQYLLLIPGREHYGHRPCSER
TEYVWLHFLLTDYEVVADHPVSRQTVMEKEATYTEPIQYRLAIRQYGELKQRERAEQLLNQIVEPNVDRDIERPLRQLLL
FVEFLWHLQKQELSVPNASEQVSAAAVAYIENHFCEPVTLERVARELRFHPDYVTRCMQRTLGMGFSHYLAYYRLSKAKQ
WLAETNETVEAIAKRVGIDDSAYFSRLFKKMEGMTPTEYRRIAQRV
>Mature_286_residues
MDYVTFSLPPLPVFIKGAESVFPEGKRHFRRTFSVFDLLYVKQGCLYMTEDGREFAVGSGQYLLLIPGREHYGHRPCSER
TEYVWLHFLLTDYEVVADHPVSRQTVMEKEATYTEPIQYRLAIRQYGELKQRERAEQLLNQIVEPNVDRDIERPLRQLLL
FVEFLWHLQKQELSVPNASEQVSAAAVAYIENHFCEPVTLERVARELRFHPDYVTRCMQRTLGMGFSHYLAYYRLSKAKQ
WLAETNETVEAIAKRVGIDDSAYFSRLFKKMEGMTPTEYRRIAQRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=126, Percent_Identity=32.5396825396825, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788725, Length=157, Percent_Identity=25.4777070063694, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33647; Mature: 33647

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYVTFSLPPLPVFIKGAESVFPEGKRHFRRTFSVFDLLYVKQGCLYMTEDGREFAVGSG
CCEEEECCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCC
QYLLLIPGREHYGHRPCSERTEYVWLHFLLTDYEVVADHPVSRQTVMEKEATYTEPIQYR
CEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
LAIRQYGELKQRERAEQLLNQIVEPNVDRDIERPLRQLLLFVEFLWHLQKQELSVPNASE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
QVSAAAVAYIENHFCEPVTLERVARELRFHPDYVTRCMQRTLGMGFSHYLAYYRLSKAKQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
WLAETNETVEAIAKRVGIDDSAYFSRLFKKMEGMTPTEYRRIAQRV
HHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MDYVTFSLPPLPVFIKGAESVFPEGKRHFRRTFSVFDLLYVKQGCLYMTEDGREFAVGSG
CCEEEECCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCC
QYLLLIPGREHYGHRPCSERTEYVWLHFLLTDYEVVADHPVSRQTVMEKEATYTEPIQYR
CEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
LAIRQYGELKQRERAEQLLNQIVEPNVDRDIERPLRQLLLFVEFLWHLQKQELSVPNASE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
QVSAAAVAYIENHFCEPVTLERVARELRFHPDYVTRCMQRTLGMGFSHYLAYYRLSKAKQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
WLAETNETVEAIAKRVGIDDSAYFSRLFKKMEGMTPTEYRRIAQRV
HHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]