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The map label for this gene is ykoC [H]

Identifier: 138894208

GI number: 138894208

Start: 597219

End: 598001

Strand: Direct

Name: ykoC [H]

Synonym: GTNG_0534

Alternate gene names: 138894208

Gene position: 597219-598001 (Clockwise)

Preceding gene: 138894207

Following gene: 138894209

Centisome position: 16.82

GC content: 46.74

Gene sequence:

>783_bases
ATGAAATGGGAGATTCACCGCCGTGAGACATGGCTTCATGAGACGAATCCGAGCTTGAAGTTGATCGTGCTCGTTATTCT
CTTTTTTGCTGTTTTGTTCATTCATAATCCGAACGTACTGATCAATTTCTCGCTCGCCCTTTTTGTTTTGTTTTGCTTTG
GGACGGGTTATTCGGCGAACGCACTTGTTTGGATGTTTTTGCCGTTCTTTCTCATCTTTGTTTCTACCGCTTCATCAATG
ATGATGTTTGGTGAAGGAAAGACGACATGGTTTCGCTGGGGGCTCATCCATGTTACGGAAGAGAGCTTTTGGCGCGGTGT
GCATCTTGGGTTTCGCGCCTTGGCACTCGGGCTATTGGGTTTAATTTTTTCCTTGACGACCCGGCCGGTGCATCTATTTT
ACTCGCTGATGCAGCAGCTGAAGCTCAAGCCGAAATATGCGTACAGCTTTCTAGCAGCTGTCCGTTTGCTGCCGATGATG
ATTGAGGAGTTTCAAAACGTGCATTATGCTTTGAAAGTACGCGGCGTGCCGAATCGTGGAGGGTTTAGCAAAGTGAAACG
CTACGCCATTCCGCTTTTATCGCAAAGCATTCGGCGCGCTCAGCGCATCGCGGTGGCGATGGAGGCGAAACAGTTTTCAG
GCAGCGGCCCGCGCACGTTTTACTATGAAATCGGGTTTGGCAAATATGACGTTCTGTTTGTTATTTTGTTTGTCGTTTTG
TTATTTGTTTCCTATCATGTTGGCATTCATTATCCGTACATTTCTATAAACGATGTACGGTAG

Upstream 100 bases:

>100_bases
GCTTTGCGACGAGACGTTGGGTGATTGAAGGCGGAGCACTTGTCCAGGACGAGCGGTTAGGTATCCGGGAGTTGGCGTTC
GCCGAAGGAGGAGCCGGGCA

Downstream 100 bases:

>100_bases
AAAGAAAGGGATCTAGATGGGAACGCTTCATTTCGTTTCGACCGGTCGGCAGACGGCCGATGAGTTCGCCGCCATTTGTC
AGCACATCCATCCGTACGCC

Product: ABC-type cobalt transport system, permease component CbiQ-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKWEIHRRETWLHETNPSLKLIVLVILFFAVLFIHNPNVLINFSLALFVLFCFGTGYSANALVWMFLPFFLIFVSTASSM
MMFGEGKTTWFRWGLIHVTEESFWRGVHLGFRALALGLLGLIFSLTTRPVHLFYSLMQQLKLKPKYAYSFLAAVRLLPMM
IEEFQNVHYALKVRGVPNRGGFSKVKRYAIPLLSQSIRRAQRIAVAMEAKQFSGSGPRTFYYEIGFGKYDVLFVILFVVL
LFVSYHVGIHYPYISINDVR

Sequences:

>Translated_260_residues
MKWEIHRRETWLHETNPSLKLIVLVILFFAVLFIHNPNVLINFSLALFVLFCFGTGYSANALVWMFLPFFLIFVSTASSM
MMFGEGKTTWFRWGLIHVTEESFWRGVHLGFRALALGLLGLIFSLTTRPVHLFYSLMQQLKLKPKYAYSFLAAVRLLPMM
IEEFQNVHYALKVRGVPNRGGFSKVKRYAIPLLSQSIRRAQRIAVAMEAKQFSGSGPRTFYYEIGFGKYDVLFVILFVVL
LFVSYHVGIHYPYISINDVR
>Mature_260_residues
MKWEIHRRETWLHETNPSLKLIVLVILFFAVLFIHNPNVLINFSLALFVLFCFGTGYSANALVWMFLPFFLIFVSTASSM
MMFGEGKTTWFRWGLIHVTEESFWRGVHLGFRALALGLLGLIFSLTTRPVHLFYSLMQQLKLKPKYAYSFLAAVRLLPMM
IEEFQNVHYALKVRGVPNRGGFSKVKRYAIPLLSQSIRRAQRIAVAMEAKQFSGSGPRTFYYEIGFGKYDVLFVILFVVL
LFVSYHVGIHYPYISINDVR

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30128; Mature: 30128

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWEIHRRETWLHETNPSLKLIVLVILFFAVLFIHNPNVLINFSLALFVLFCFGTGYSAN
CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCH
ALVWMFLPFFLIFVSTASSMMMFGEGKTTWFRWGLIHVTEESFWRGVHLGFRALALGLLG
HHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHH
LIFSLTTRPVHLFYSLMQQLKLKPKYAYSFLAAVRLLPMMIEEFQNVHYALKVRGVPNRG
HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
GFSKVKRYAIPLLSQSIRRAQRIAVAMEAKQFSGSGPRTFYYEIGFGKYDVLFVILFVVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHH
LFVSYHVGIHYPYISINDVR
HHHHHHHHEECCEEEEECCC
>Mature Secondary Structure
MKWEIHRRETWLHETNPSLKLIVLVILFFAVLFIHNPNVLINFSLALFVLFCFGTGYSAN
CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCH
ALVWMFLPFFLIFVSTASSMMMFGEGKTTWFRWGLIHVTEESFWRGVHLGFRALALGLLG
HHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHH
LIFSLTTRPVHLFYSLMQQLKLKPKYAYSFLAAVRLLPMMIEEFQNVHYALKVRGVPNRG
HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
GFSKVKRYAIPLLSQSIRRAQRIAVAMEAKQFSGSGPRTFYYEIGFGKYDVLFVILFVVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHH
LFVSYHVGIHYPYISINDVR
HHHHHHHHEECCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]