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The map label for this gene is 138893993

Identifier: 138893993

GI number: 138893993

Start: 361435

End: 361845

Strand: Direct

Name: 138893993

Synonym: GTNG_0319

Alternate gene names: NA

Gene position: 361435-361845 (Clockwise)

Preceding gene: 138893992

Following gene: 138893997

Centisome position: 10.18

GC content: 34.55

Gene sequence:

>411_bases
GTGAAGGATATATGGAATTGGATACAAATTATTGTTACAGCACTAGGTGGTTTCATGGGTGGGTTTTTAGGAGGGTTAGA
TGGCTTTTTGTATGCATTGATTATATTAGTTGTTGCTGATTATATCACAGGAATTATGTGTGCAATTGTCGATAAAGAAC
TATCTAGTGAAATTGGTTACCGAGGGATATTTAAAAAAGTGTTAATTTTTATATTGGTTGGTGTCGGGCATATGATTGAC
ACTCATTTGATAGGAGATGGCAGCGTTCTTAGAACAGCGGTCATCTTTTTTTATTGTTCAAATAAAGGTATTTCTATGCT
AGAAAACGCTTCACGATTAGGTTTACCAATACCAGAGAAGTTAAAAAATGTACTTGCTCAGTTACACAATAAAGGGGGAA
ATGAATCATGA

Upstream 100 bases:

>100_bases
AAGCATTGCCTAAACAAATATAAATAATTCAAGGGTGTCTACAAAATGTAGGCACTCTTTTTATATAGATTATTTTAAAA
ACTAAAGAAGGAAACTTACT

Downstream 100 bases:

>100_bases
ATTTAAAAAAGTTATATTTAACAAAGAATGAGTGCTATAAAGCGGGAAGAAAGATTACACCAAAAGGAATTATGGTTCAC
AGCACAGGAGCAAACAATTC

Product: Phage tail-host specificity protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MKDIWNWIQIIVTALGGFMGGFLGGLDGFLYALIILVVADYITGIMCAIVDKELSSEIGYRGIFKKVLIFILVGVGHMID
THLIGDGSVLRTAVIFFYCSNKGISMLENASRLGLPIPEKLKNVLAQLHNKGGNES

Sequences:

>Translated_136_residues
MKDIWNWIQIIVTALGGFMGGFLGGLDGFLYALIILVVADYITGIMCAIVDKELSSEIGYRGIFKKVLIFILVGVGHMID
THLIGDGSVLRTAVIFFYCSNKGISMLENASRLGLPIPEKLKNVLAQLHNKGGNES
>Mature_136_residues
MKDIWNWIQIIVTALGGFMGGFLGGLDGFLYALIILVVADYITGIMCAIVDKELSSEIGYRGIFKKVLIFILVGVGHMID
THLIGDGSVLRTAVIFFYCSNKGISMLENASRLGLPIPEKLKNVLAQLHNKGGNES

Specific function: Unknown

COG id: COG4824

COG function: function code R; Phage-related holin (Lysis protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cp-1 holin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006480 [H]

Pfam domain/function: PF05105 Phage_holin_4 [H]

EC number: NA

Molecular weight: Translated: 14803; Mature: 14803

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIWNWIQIIVTALGGFMGGFLGGLDGFLYALIILVVADYITGIMCAIVDKELSSEIGY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
RGIFKKVLIFILVGVGHMIDTHLIGDGSVLRTAVIFFYCSNKGISMLENASRLGLPIPEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHH
LKNVLAQLHNKGGNES
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKDIWNWIQIIVTALGGFMGGFLGGLDGFLYALIILVVADYITGIMCAIVDKELSSEIGY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
RGIFKKVLIFILVGVGHMIDTHLIGDGSVLRTAVIFFYCSNKGISMLENASRLGLPIPEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHH
LKNVLAQLHNKGGNES
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]