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The map label for this gene is abrB [H]

Identifier: 138893708

GI number: 138893708

Start: 41398

End: 41691

Strand: Reverse

Name: abrB [H]

Synonym: GTNG_0029

Alternate gene names: 138893708

Gene position: 41691-41398 (Counterclockwise)

Preceding gene: 138893821

Following gene: 138893693

Centisome position: 1.17

GC content: 44.22

Gene sequence:

>294_bases
ATGAAATCGACAGGGATTGTACGTAAAGTCGATGAGCTGGGCCGCGTCGTCATCCCGATTGAGTTGCGCCGTACGTTAGA
TATTAATGAAAAAGATGCATTAGAGATTTATGTCGACGACGACCGCATCATTTTGAAAAAATATAAACCGAACATGACCT
GCGTTGTCACAGGCGAAGTTTCGGACGACAACTTTAAATTAGCCGGCGGTAAAATCATTTTAAGCCGCGAAGGAGCAGAA
ATTTTGCTTCAGGAGATCCGTCAGCACTTACAAGACTCAACGGACAGCGAATAA

Upstream 100 bases:

>100_bases
GATTGACGCTTAATGGAAACACTGATATGATTAGGGTGTAGGAAATTTGTCGAATATTGACGAATAAACGCAAAAATTAT
TTCGGAGAGGAGAAAAGACG

Downstream 100 bases:

>100_bases
AAAAAGAGTTTCTCTGGTTTCTCAGAGAAACTCTTTTTTCTCTTTCTGCCGATGGTACTGTTGATAGACGTCGCGTTTCG
ACATTTTTCGATCACCAGCT

Product: transition state regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MKSTGIVRKVDELGRVVIPIELRRTLDINEKDALEIYVDDDRIILKKYKPNMTCVVTGEVSDDNFKLAGGKIILSREGAE
ILLQEIRQHLQDSTDSE

Sequences:

>Translated_97_residues
MKSTGIVRKVDELGRVVIPIELRRTLDINEKDALEIYVDDDRIILKKYKPNMTCVVTGEVSDDNFKLAGGKIILSREGAE
ILLQEIRQHLQDSTDSE
>Mature_97_residues
MKSTGIVRKVDELGRVVIPIELRRTLDINEKDALEIYVDDDRIILKKYKPNMTCVVTGEVSDDNFKLAGGKIILSREGAE
ILLQEIRQHLQDSTDSE

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 11013; Mature: 11013

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLDINEKDALEIYVDDDRIILKKYKPNMTCVVTGEV
CCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEECC
SDDNFKLAGGKIILSREGAEILLQEIRQHLQDSTDSE
CCCCEEEECCEEEEECCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLDINEKDALEIYVDDDRIILKKYKPNMTCVVTGEV
CCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEECC
SDDNFKLAGGKIILSREGAEILLQEIRQHLQDSTDSE
CCCCEEEECCEEEEECCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]