Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
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Accession | NC_009091 |
Length | 1,641,879 |
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The map label for this gene is 126696806
Identifier: 126696806
GI number: 126696806
Start: 1235698
End: 1236435
Strand: Reverse
Name: 126696806
Synonym: P9301_14681
Alternate gene names: NA
Gene position: 1236435-1235698 (Counterclockwise)
Preceding gene: 126696807
Following gene: 126696804
Centisome position: 75.31
GC content: 38.35
Gene sequence:
>738_bases ATGCCAGCAAGTAGTAATTTCAATCAAGCTATTCGTGAAGCACAAACAAGTTCAATTGTTGGACCTAATGTTGTTCAAAA AGCTCTACCTTATGTAGGTGGAGGTATGGTTCTTACTTCTTTAGGGGTTTTAGCAGGTGTCTCACTCATAGCAACAAATC CTGGGCTTTTTCAGCCTCTTTCAATAGTTGCATTAATTGCTGAATTGATTTTGTTTTTTATAGCCACAAGTGCTGCAAAT AATGCAAATAATGCGAAGGCCCTACCCCTTTTGACAGGATTTAGTCTGTTAACTGGGTTTACCTTAAGTGGAATAGTTGC TTTAGCAATAGGAACAATTGGTATTGGTTCGGTTGGAACAGCTGCTTTAGCCACAGGTATAACTTTCGTTATCGCCTCTT ACACTGGCCAAAGAATGAGTGATAGTGTTGGTCAAGCACTAAGCGGAGTAGTTGGTCTTGGATTGATAGGTCTCCTCATA GCAATGTTTGTCCAATTAATTGGAGGATTCTTTGCCCCAGGTGTTTTTGGAGGTTCAGGACTCGAATTGATAATTGCAGG ATTTGGAACTGTCTTATTTGTTGCAATGTCTTTCGTTGATTTCTATACAATGCCAAGAAGATATAATGATGATCAATACC TTGCAGGAGCTTTGGGTATGTACCTAACTTATATAAATCTTTTTGTTTTTATATTGAGATTAATGATTGCATTACAAGGC GGTGGAAGAAGAGACTAA
Upstream 100 bases:
>100_bases CAGAAAATTATTGAGGCTTATCAATAACTTTATAACTCTGGAGATCCGTACCCTGAAATTTTAAAAATCAAGTAGAATAT ACTCATATTTAATAAAAAAA
Downstream 100 bases:
>100_bases ACACATTAAGTAAATAACTAATCTAAAGCGTAGACTTGTTTCTACGCTTTTTTAATGGGCGATATCAAGAATTTGTTTTT TTATAAATTCCTTTTGCTCT
Product: integral membrane protein, interacts with FtsH
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MPASSNFNQAIREAQTSSIVGPNVVQKALPYVGGGMVLTSLGVLAGVSLIATNPGLFQPLSIVALIAELILFFIATSAAN NANNAKALPLLTGFSLLTGFTLSGIVALAIGTIGIGSVGTAALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLI AMFVQLIGGFFAPGVFGGSGLELIIAGFGTVLFVAMSFVDFYTMPRRYNDDQYLAGALGMYLTYINLFVFILRLMIALQG GGRRD
Sequences:
>Translated_245_residues MPASSNFNQAIREAQTSSIVGPNVVQKALPYVGGGMVLTSLGVLAGVSLIATNPGLFQPLSIVALIAELILFFIATSAAN NANNAKALPLLTGFSLLTGFTLSGIVALAIGTIGIGSVGTAALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLI AMFVQLIGGFFAPGVFGGSGLELIIAGFGTVLFVAMSFVDFYTMPRRYNDDQYLAGALGMYLTYINLFVFILRLMIALQG GGRRD >Mature_244_residues PASSNFNQAIREAQTSSIVGPNVVQKALPYVGGGMVLTSLGVLAGVSLIATNPGLFQPLSIVALIAELILFFIATSAANN ANNAKALPLLTGFSLLTGFTLSGIVALAIGTIGIGSVGTAALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLIA MFVQLIGGFFAPGVFGGSGLELIIAGFGTVLFVAMSFVDFYTMPRRYNDDQYLAGALGMYLTYINLFVFILRLMIALQGG GRRD
Specific function: Unknown
COG id: COG0670
COG function: function code R; Integral membrane protein, interacts with FtsH
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25229; Mature: 25098
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASSNFNQAIREAQTSSIVGPNVVQKALPYVGGGMVLTSLGVLAGVSLIATNPGLFQPL CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH SIVALIAELILFFIATSAANNANNAKALPLLTGFSLLTGFTLSGIVALAIGTIGIGSVGT HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLIAMFVQLIGGFFAPGVFGGSG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LELIIAGFGTVLFVAMSFVDFYTMPRRYNDDQYLAGALGMYLTYINLFVFILRLMIALQG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGRRD CCCCC >Mature Secondary Structure PASSNFNQAIREAQTSSIVGPNVVQKALPYVGGGMVLTSLGVLAGVSLIATNPGLFQPL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH SIVALIAELILFFIATSAANNANNAKALPLLTGFSLLTGFTLSGIVALAIGTIGIGSVGT HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AALATGITFVIASYTGQRMSDSVGQALSGVVGLGLIGLLIAMFVQLIGGFFAPGVFGGSG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC LELIIAGFGTVLFVAMSFVDFYTMPRRYNDDQYLAGALGMYLTYINLFVFILRLMIALQG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGRRD CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA