Click here to switch to the map view.

The map label for this gene is pbsY [H]

Identifier: 126696562

GI number: 126696562

Start: 1040019

End: 1040147

Strand: Reverse

Name: pbsY [H]

Synonym: P9301_12241

Alternate gene names: 126696562

Gene position: 1040147-1040019 (Counterclockwise)

Preceding gene: 126696564

Following gene: 126696561

Centisome position: 63.35

GC content: 34.88

Gene sequence:

>129_bases
ATGATTTCAAAAATGCTAAGAACAATCGTAGTTTTTGCACCCATTATCGCTGCTTTAGCTTGGGTTATATTCAATATACA
AAAACCAGCAAGAGAGCAATTCAATAGGGACTTTTTGGGCAAGGATTAA

Upstream 100 bases:

>100_bases
CAAGTTGAACAATAGAAAAACAATTCTTAACTTATGAAATAAAAAATTAAAATTTCTCTCTAAATTTACAGTTAAAAGTT
AAAATAATCTAGTTAATAAT

Downstream 100 bases:

>100_bases
TCTAATTTGTTAGATAAAGAAGTATTAGTTATTGGAGCTGGTCTTGCAGGATCTGAAGCTGCTTGGCAATTAGCAAATTC
TGGTGTACCAGTTAAGTTAG

Product: photosystem II protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 42; Mature: 42

Protein sequence:

>42_residues
MISKMLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD

Sequences:

>Translated_42_residues
MISKMLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD
>Mature_42_residues
MISKMLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD

Specific function: Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009388 [H]

Pfam domain/function: PF06298 PsbY [H]

EC number: NA

Molecular weight: Translated: 4863; Mature: 4863

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKMLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MISKMLRTIVVFAPIIAALAWVIFNIQKPAREQFNRDFLGKD
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]