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The map label for this gene is crtH [H]

Identifier: 126696560

GI number: 126696560

Start: 1037032

End: 1038576

Strand: Reverse

Name: crtH [H]

Synonym: P9301_12221

Alternate gene names: 126696560

Gene position: 1038576-1037032 (Counterclockwise)

Preceding gene: 126696561

Following gene: 126696559

Centisome position: 63.26

GC content: 34.11

Gene sequence:

>1545_bases
ATGGAATTAAATAAGGAAAACTTCGATGCAATTATTATTGGCTCAGGAATAGGAGGGTTAGTAACTGCTTCACAATTGGC
AGCGAAAGGAGCTCAAGTATTAGTTCTTGAAAAATATATTATTCCAGGAGGGAGTGGAGGCTCTTTTAAAAGAAAAGGCT
ATACCTTTGATGTAGGAGCTTCAATGATTTTTGGATTTGGAGAAAAAGGTTATACCAATTTATTAACTCGTGCATTAAAG
GATGTAAACGAAAAATGCGAAACTATTCCGGATCCTGTTCAACTGGAATATCACTTACCACATAACTTTAATATTTCAGT
AGATAAAAATTATGAGCAATTTATAAGCAAATTATCAGCTAGTTTCCCCAATGAAAAAAAAGGTATCAAGAAATTCTATG
ATACTTGTGCCAGTGTATTTAAATGTTTAGATTCAATGCCTCTTTTATCAATAGAGGATCCAAGTTATCTTTTTAAAGTC
TTCTTTAAATCCCCATTATCCTGTTTAGGGTTAGCTAGATGGTTACCTGCAAATGCAGGAGATGTTGCGAGAAAGTTTAT
AAAAGATCCTGAACTTTTAAAATTTATCGATATCGAATGTTTTTGTTGGTCTGTAATGCCAGCTCTAAAAACCCCTATGA
TTAATGCAGGGATGGTATTTACAGATAGGCATGCTGGGGGTATAAATTATCCAAAAGGGGGAGTTGGAACGATAGCAGAG
AAGTTTGTTTCTGGTATTGAAAAATTAGGAGGAAAAGTAAGATATAAAGCCAACGTGACTGAAATCCTCTTAAAGGATGA
GAAGGCGGTAGGAGTTAAGCTCTCAAATGGAGAAGAGATATATTCAAATATTATTGTATCCAACTCTACTAGATGGGATA
CATTTGGATTGAAAGATAATACTAAAGGATTAATTTCAAGTGAAAACGTGCCAAAAAGTGAATATAAGTGGTCAGAAACT
TATAAACCCTCACCTTCTTTTGTTTCGATTCACCTTGGAGTAGAAAAAAATCTAATACCCGACAATTTTAATTGTCATCA
TATAATAGTTAAAAATTGGGATGAATTAGAAAGCGAAAAGGGAGTTATTTTTGTTTCTATACCTACTTTGCTTGACTCGT
CTTTGGCTCCTGAAGGTAAACATATCGTGCATGCATTTACTCCTTCATCGATTAGTGAATGGGAAGGCCTAACAAGGAAA
GAATATTTGCAAAAGAAAGATAAATATTTTTCTTTCCTTGTTGAAAAAATATCAACTATTCTTCCTAATCTTGAACAAAA
TATTGACCACAAAGAAATTGGTACTCCCAAAACTCATAAAAAGTTTCTTGGAAGATTTGAAGGTAGTTATGGGCCAATTC
CCAGTAAAAAGTTGCTTGGACTTTTGCCAATGCCTTTCAACACTACAAAAATTCAAAACCTTTATTGTGTAGGGGATTCA
TGTTTCCCTGGCCAAGGCCTAAATGCCGTTGCTTTTAGTGGATACGCATGCGCTCATAAAATAGGTGCAAAGTTAAACTT
AAACAGTTTTAAATTGCCAGATTAA

Upstream 100 bases:

>100_bases
CAGAAGCCTTGAATGACTTTAAAAATAAACTAGATTCTTGTTTTGATAAAGACCACTTACTCAGCAAAATTTACTAAGAT
AAATTATCAAGGATCAAAAA

Downstream 100 bases:

>100_bases
AAGGATTTTTATGAAATGATAGAAAAATTTAAAACTCTTTTTTTTGTGAAAAGTTCGTTAATTTCTCTTTATTTAGCGCT
TACAATTCCTTTACCATTTA

Product: putative carotenoid isomerase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MELNKENFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGASMIFGFGEKGYTNLLTRALK
DVNEKCETIPDPVQLEYHLPHNFNISVDKNYEQFISKLSASFPNEKKGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKV
FFKSPLSCLGLARWLPANAGDVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
KFVSGIEKLGGKVRYKANVTEILLKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDNTKGLISSENVPKSEYKWSET
YKPSPSFVSIHLGVEKNLIPDNFNCHHIIVKNWDELESEKGVIFVSIPTLLDSSLAPEGKHIVHAFTPSSISEWEGLTRK
EYLQKKDKYFSFLVEKISTILPNLEQNIDHKEIGTPKTHKKFLGRFEGSYGPIPSKKLLGLLPMPFNTTKIQNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGAKLNLNSFKLPD

Sequences:

>Translated_514_residues
MELNKENFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGASMIFGFGEKGYTNLLTRALK
DVNEKCETIPDPVQLEYHLPHNFNISVDKNYEQFISKLSASFPNEKKGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKV
FFKSPLSCLGLARWLPANAGDVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
KFVSGIEKLGGKVRYKANVTEILLKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDNTKGLISSENVPKSEYKWSET
YKPSPSFVSIHLGVEKNLIPDNFNCHHIIVKNWDELESEKGVIFVSIPTLLDSSLAPEGKHIVHAFTPSSISEWEGLTRK
EYLQKKDKYFSFLVEKISTILPNLEQNIDHKEIGTPKTHKKFLGRFEGSYGPIPSKKLLGLLPMPFNTTKIQNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGAKLNLNSFKLPD
>Mature_514_residues
MELNKENFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGASMIFGFGEKGYTNLLTRALK
DVNEKCETIPDPVQLEYHLPHNFNISVDKNYEQFISKLSASFPNEKKGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKV
FFKSPLSCLGLARWLPANAGDVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
KFVSGIEKLGGKVRYKANVTEILLKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDNTKGLISSENVPKSEYKWSET
YKPSPSFVSIHLGVEKNLIPDNFNCHHIIVKNWDELESEKGVIFVSIPTLLDSSLAPEGKHIVHAFTPSSISEWEGLTRK
EYLQKKDKYFSFLVEKISTILPNLEQNIDHKEIGTPKTHKKFLGRFEGSYGPIPSKKLLGLLPMPFNTTKIQNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGAKLNLNSFKLPD

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17540238, Length=545, Percent_Identity=22.9357798165138, Blast_Score=88, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 56934; Mature: 56934

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNKENFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGA
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
SMIFGFGEKGYTNLLTRALKDVNEKCETIPDPVQLEYHLPHNFNISVDKNYEQFISKLSA
HHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
SFPNEKKGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKVFFKSPLSCLGLARWLPANAG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCHH
DVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
KFVSGIEKLGGKVRYKANVTEILLKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDN
HHHHHHHHHCCEEEEECCCEEEEEECCCEEEEEECCCHHHHHHHEEECCCCCCCCCCCCC
TKGLISSENVPKSEYKWSETYKPSPSFVSIHLGVEKNLIPDNFNCHHIIVKNWDELESEK
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCHHHCCCC
GVIFVSIPTLLDSSLAPEGKHIVHAFTPSSISEWEGLTRKEYLQKKDKYFSFLVEKISTI
CEEEEEEHHHHCCCCCCCCCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LPNLEQNIDHKEIGTPKTHKKFLGRFEGSYGPIPSKKLLGLLPMPFNTTKIQNLYCVGDS
HCCHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCEECEEEEECCC
CFPGQGLNAVAFSGYACAHKIGAKLNLNSFKLPD
CCCCCCCCEEEECCHHHHHHCCCEECCCCCCCCC
>Mature Secondary Structure
MELNKENFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGA
CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
SMIFGFGEKGYTNLLTRALKDVNEKCETIPDPVQLEYHLPHNFNISVDKNYEQFISKLSA
HHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
SFPNEKKGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKVFFKSPLSCLGLARWLPANAG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCHH
DVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
KFVSGIEKLGGKVRYKANVTEILLKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDN
HHHHHHHHHCCEEEEECCCEEEEEECCCEEEEEECCCHHHHHHHEEECCCCCCCCCCCCC
TKGLISSENVPKSEYKWSETYKPSPSFVSIHLGVEKNLIPDNFNCHHIIVKNWDELESEK
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCHHHCCCC
GVIFVSIPTLLDSSLAPEGKHIVHAFTPSSISEWEGLTRKEYLQKKDKYFSFLVEKISTI
CEEEEEEHHHHCCCCCCCCCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LPNLEQNIDHKEIGTPKTHKKFLGRFEGSYGPIPSKKLLGLLPMPFNTTKIQNLYCVGDS
HCCHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCEECEEEEECCC
CFPGQGLNAVAFSGYACAHKIGAKLNLNSFKLPD
CCCCCCCCEEEECCHHHHHHCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2254247 [H]