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The map label for this gene is lhr [C]

Identifier: 126696120

GI number: 126696120

Start: 677727

End: 680213

Strand: Reverse

Name: lhr [C]

Synonym: P9301_07821

Alternate gene names: 126696120

Gene position: 680213-677727 (Counterclockwise)

Preceding gene: 126696121

Following gene: 126696119

Centisome position: 41.43

GC content: 29.84

Gene sequence:

>2487_bases
ATGAAAAATATTACGAAAAATAATAAGCAAAATAATTTAATTTCTAAAATTAAACAGTTTTTCTCCACAAATGGATGGGA
GCCAATACCCTATCAGATCGAATCTTGGGAAGCATTTTTAAATGGAGAGAGTGGAATAATACAAGTTCCTACTGGATGCG
GCAAAACTTATGCTGCATTAATGGGACCTCTATCAAAGATAGAAGATCCCAAAAATAATAAAAGTGTGAATATATTATTG
ATAACCCCTTTAAAGGCACTAAGTAGAGATCTAAAAAATTCAATACAACTAGCAGCTTTTCATTTTAATAAAGAAATCAC
TGTTGAAATTAGGAACGGGGATACAACCCCATATGAAAAGAAAAAGCAACTAGCTAAACCACCTAATATTCTTATTACAA
CTCCAGAGTCTTTATCTCTTTTACTTTCTAATAAAGAATCTAATAATCTGTTCAAGGACTTATCATCAATAATTATTGAT
GAATGGCATGAATTAATGGGTAGTAAAAGAGGAAACCAGTGCGAGTTATCTTTAAGTTGGCTAAGAGGTAATATAAAAAA
TTTACAAATTTGGGCAATGTCTGCAACTATTGGAAATGTTGAAGAAGCAGCAAGAGCAATAGTTGGGATGAGCGCTATTA
AACCCAAAATTATTAGTACAAATATTCAAAAAGAGATCGAAATTGTAAGTGTTTTACCAGAGGAGGAAACTACCTTTCCA
TGGAGTGGGCATCTTGGGATTAGAAGTCATTCTTCACTATTAAAAATCCTAGATAAAAATAAAAGCACCTTATTATTCAC
CAATACCCGAAATCAATCTGAAAGATGGTATCAATGTCTTAAGTTTTTTCTCCCAGAGATGGATGACAAAATTGCACTTC
ATCACGGCTCCCTGGATAAAGAAGATAGAAAAAGAGTTGAAGAAGGGGTTAAAGACGGATTAATAAAATGGGTAGTCTGC
ACCAGCTCGTTAGATTTAGGAGTTGACTTTCAACCTGTAGATCAAATAGTTCAAATTGGTAGTGCAAAGAATTTAGCTAG
ACTTATCCAAAGAGCGGGAAGAAGTGCTCATAGACCAGGTGGAAAATCAAAAATAATTTTTATGCCTACTAATTCTTTAG
AATTATTAGAGATTAGTGCAATGAGAAGAATAATAAAAAGTGGTATATCTGAGGAAATTAGACTTCCTGAATTATCTTAT
GATGTGCTTCTACAACATCTAATAAGTTTGGCATGTGGAAATGGCTTTGATCCCAAAATTGAGAAAGAAAGAATTAAAAA
TTGCTGGAGTTATAGAAACTTAAAAGATAAAGATTGGAATTGGTGTATTGACTTTTTAGAATATGGAGGCAAATGTCTTA
AAGCATATCCAAAATATAAAAAGATAGTTAAAGAAGAAGCACAAAATAATAATGAAAACTTTAAATATTTTGTAAAAGAT
AAATCTTTAATAAGAATGCATAAGTTTAATATTGGGACAATTACAAGTGACAAATTTGTGAATGTCAAATATATGAAAGG
TAAATCCTTAGGTAATTTAGAAGAGAATTTTGCTTCAAAATTAAATCCCGGAGATACATTTTACTTTGCCGGCAAAATGC
TTCATTTTGTAAGAATAAGAGATATGATTTTATACGTTAAAAAATCAACCAAAAAAAGTTCTCTAATTCCTGCATGGGTT
GGAGGTCAAATGGCAATTTCAGATCTACTTTGTGAGAGTTTGAGAAAAGAAATAGATATATGCAACGAACTAAAAAATCA
TGATTGCTTAAATCCTGAACTCAATTCATTACGCCCAATATTGAAGAGACAAAAAGTTCTTTCAAATATTCCAAAGAAAG
ACGAATTCCTTATAGAAATATATAAAACCAAGGATTTATCAAATCTTTTTGTTTTTACACTTGATGGCAAATTTGTAAAT
GAAGGAATTGCATTTTTATGGGCTTTGAGATTGGCAAAATTAAAAAAATCTACATTTAGTATTACTGCTAATGATTTTGG
ATTCAGCTTAACTACTGCAGAAGATTATGATTTTTCCATAATAAAAAAAGAAGCTGATTACTTTTTGAATAACAAAAAAT
TAGAAGAAGATCTAGAAAATGCAATTAATTTTTCAGAATTAACAAAGCGTAGATTTAAAAATATTGCCCAAATAAGTGGA
CTAGTAAATCAAAATAATCCAACCAAAACAAAAACTTCTTCCCAACTTCAAATAAGTTCAAGTCTTTTCTACGATGTGTT
TACTAAATATGAAGAAGGTCATCTTTTGATAAAACAATCGCATCAAGAAGTTAAAGAATATCAATTAGAAAATAAAAGAA
TATCTAGATCATTAGAAAGATTAAAAAATTTAAAAATGCTACTAAACGAGATAAAAACTCCAACTCCTTTTGCTTTCCCT
TTACTAGTTGAAAGACTTAAAAATACTTTAAGCAATGAGCCATTAGAAAAAAGAGTAGAAAAACTTATAAAAAAATATAG
TGATTAA

Upstream 100 bases:

>100_bases
TAGCGGTACGATTTCCAAGAATAACAAAATGGAGAAAAGATAAAAAAATTAAAGATGCAGATAGCTTAGAGAATGCTTAT
GAACTAATGAAAAAAATATC

Downstream 100 bases:

>100_bases
ATGAAAAAAAGTTCTTTTAAATTTTGTTGGGAAGATACATTGTTGGAGATGCTTCCTTCAAGGGCGTTATTTCTACCGGA
AACAAAAGAGTTATTAATAT

Product: DEAD/DEAH box helicase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MKNITKNNKQNNLISKIKQFFSTNGWEPIPYQIESWEAFLNGESGIIQVPTGCGKTYAALMGPLSKIEDPKNNKSVNILL
ITPLKALSRDLKNSIQLAAFHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKESNNLFKDLSSIIID
EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNVEEAARAIVGMSAIKPKIISTNIQKEIEIVSVLPEEETTFP
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMDDKIALHHGSLDKEDRKRVEEGVKDGLIKWVVC
TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSY
DVLLQHLISLACGNGFDPKIEKERIKNCWSYRNLKDKDWNWCIDFLEYGGKCLKAYPKYKKIVKEEAQNNNENFKYFVKD
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLHFVRIRDMILYVKKSTKKSSLIPAWV
GGQMAISDLLCESLRKEIDICNELKNHDCLNPELNSLRPILKRQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVN
EGIAFLWALRLAKLKKSTFSITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP
LLVERLKNTLSNEPLEKRVEKLIKKYSD

Sequences:

>Translated_828_residues
MKNITKNNKQNNLISKIKQFFSTNGWEPIPYQIESWEAFLNGESGIIQVPTGCGKTYAALMGPLSKIEDPKNNKSVNILL
ITPLKALSRDLKNSIQLAAFHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKESNNLFKDLSSIIID
EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNVEEAARAIVGMSAIKPKIISTNIQKEIEIVSVLPEEETTFP
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMDDKIALHHGSLDKEDRKRVEEGVKDGLIKWVVC
TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSY
DVLLQHLISLACGNGFDPKIEKERIKNCWSYRNLKDKDWNWCIDFLEYGGKCLKAYPKYKKIVKEEAQNNNENFKYFVKD
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLHFVRIRDMILYVKKSTKKSSLIPAWV
GGQMAISDLLCESLRKEIDICNELKNHDCLNPELNSLRPILKRQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVN
EGIAFLWALRLAKLKKSTFSITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP
LLVERLKNTLSNEPLEKRVEKLIKKYSD
>Mature_828_residues
MKNITKNNKQNNLISKIKQFFSTNGWEPIPYQIESWEAFLNGESGIIQVPTGCGKTYAALMGPLSKIEDPKNNKSVNILL
ITPLKALSRDLKNSIQLAAFHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKESNNLFKDLSSIIID
EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNVEEAARAIVGMSAIKPKIISTNIQKEIEIVSVLPEEETTFP
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMDDKIALHHGSLDKEDRKRVEEGVKDGLIKWVVC
TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSY
DVLLQHLISLACGNGFDPKIEKERIKNCWSYRNLKDKDWNWCIDFLEYGGKCLKAYPKYKKIVKEEAQNNNENFKYFVKD
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLHFVRIRDMILYVKKSTKKSSLIPAWV
GGQMAISDLLCESLRKEIDICNELKNHDCLNPELNSLRPILKRQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVN
EGIAFLWALRLAKLKKSTFSITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP
LLVERLKNTLSNEPLEKRVEKLIKKYSD

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787942, Length=886, Percent_Identity=23.9277652370203, Blast_Score=196, Evalue=7e-51,
Organism=Saccharomyces cerevisiae, GI9755332, Length=375, Percent_Identity=25.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320497, Length=346, Percent_Identity=22.5433526011561, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 94951; Mature: 94951

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNITKNNKQNNLISKIKQFFSTNGWEPIPYQIESWEAFLNGESGIIQVPTGCGKTYAAL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCHHHHCCCCCCEEECCCCCCHHHHHH
MGPLSKIEDPKNNKSVNILLITPLKALSRDLKNSIQLAAFHFNKEITVEIRNGDTTPYEK
HCCHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHH
KKQLAKPPNILITTPESLSLLLSNKESNNLFKDLSSIIIDEWHELMGSKRGNQCELSLSW
HHHHCCCCCEEEECCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
LRGNIKNLQIWAMSATIGNVEEAARAIVGMSAIKPKIISTNIQKEIEIVSVLPEEETTFP
HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHEEEEEECCCCCCCCC
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMDDKIALHHGSLDK
CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCH
EDRKRVEEGVKDGLIKWVVCTSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPG
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
GKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSYDVLLQHLISLACGNGFDPKI
CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
EKERIKNCWSYRNLKDKDWNWCIDFLEYGGKCLKAYPKYKKIVKEEAQNNNENFKYFVKD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLHFVRIR
CCEEEEEECCCCEECCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHH
DMILYVKKSTKKSSLIPAWVGGQMAISDLLCESLRKEIDICNELKNHDCLNPELNSLRPI
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LKRQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVNEGIAFLWALRLAKLKKSTFS
HHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEE
ITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG
EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLER
HHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LKNLKMLLNEIKTPTPFAFPLLVERLKNTLSNEPLEKRVEKLIKKYSD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNITKNNKQNNLISKIKQFFSTNGWEPIPYQIESWEAFLNGESGIIQVPTGCGKTYAAL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCHHHHCCCCCCEEECCCCCCHHHHHH
MGPLSKIEDPKNNKSVNILLITPLKALSRDLKNSIQLAAFHFNKEITVEIRNGDTTPYEK
HCCHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHH
KKQLAKPPNILITTPESLSLLLSNKESNNLFKDLSSIIIDEWHELMGSKRGNQCELSLSW
HHHHCCCCCEEEECCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
LRGNIKNLQIWAMSATIGNVEEAARAIVGMSAIKPKIISTNIQKEIEIVSVLPEEETTFP
HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHEEEEEECCCCCCCCC
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMDDKIALHHGSLDK
CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCH
EDRKRVEEGVKDGLIKWVVCTSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPG
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
GKSKIIFMPTNSLELLEISAMRRIIKSGISEEIRLPELSYDVLLQHLISLACGNGFDPKI
CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
EKERIKNCWSYRNLKDKDWNWCIDFLEYGGKCLKAYPKYKKIVKEEAQNNNENFKYFVKD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLHFVRIR
CCEEEEEECCCCEECCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHHHH
DMILYVKKSTKKSSLIPAWVGGQMAISDLLCESLRKEIDICNELKNHDCLNPELNSLRPI
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LKRQKVLSNIPKKDEFLIEIYKTKDLSNLFVFTLDGKFVNEGIAFLWALRLAKLKKSTFS
HHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEE
ITANDFGFSLTTAEDYDFSIIKKEADYFLNNKKLEEDLENAINFSELTKRRFKNIAQISG
EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLER
HHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LKNLKMLLNEIKTPTPFAFPLLVERLKNTLSNEPLEKRVEKLIKKYSD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]