Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 126695922

GI number: 126695922

Start: 510528

End: 510920

Strand: Reverse

Name: tdcF [C]

Synonym: P9301_05841

Alternate gene names: 126695922

Gene position: 510920-510528 (Counterclockwise)

Preceding gene: 126695923

Following gene: 126695921

Centisome position: 31.12

GC content: 33.08

Gene sequence:

>393_bases
ATGGCTCCCAAACAAGTAATTAAAACATCAAATGCTCCAGATCCAGTAGGACCTTATAATCAAGCAATAAAAGCTGGGGA
TTTTATCTATTGTTCTGGTCAAATTGCTATAGACCCAGCTGTAAATGAAATAACATGTTTAGGTGATATAGAGAAGGAAA
CTTTTCAAGTTTTAAAAAATCTCGCAGAAGTTCTTAAAGCTGGTGGAGCCAAAATAGATGATGTAATAAAGACAACTATT
TACTTAACGGACTTAAGTAATTTTCAAATTGTCAATAAAGTATATAGTGATTTTTTTAATATTGAGAATCCTCCAGCAAG
GGCCTGTGTGGAAGTTTCATCCCTACCAAAAGGAGTTTTAGTTGAAATAGATTGCATCGCATTTCTAGATTAA

Upstream 100 bases:

>100_bases
AATAAACCTGTTCTTAAGAGCAAAAAATTTAGAAGAATTTACTTTTTTAAGAGCAAATAAAGATTTATGGGTTTAAATTG
ATAGGTATCTTCTTAAACAA

Downstream 100 bases:

>100_bases
TTTCTAATTATTGAGAAATTTGAAATATGAACCAATTGTGCACCATAGTTGTATAGATTATTAGTTGATAATTAATCCTT
GATCTATGTCAGCAGCAAAG

Product: YjgF family translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MAPKQVIKTSNAPDPVGPYNQAIKAGDFIYCSGQIAIDPAVNEITCLGDIEKETFQVLKNLAEVLKAGGAKIDDVIKTTI
YLTDLSNFQIVNKVYSDFFNIENPPARACVEVSSLPKGVLVEIDCIAFLD

Sequences:

>Translated_130_residues
MAPKQVIKTSNAPDPVGPYNQAIKAGDFIYCSGQIAIDPAVNEITCLGDIEKETFQVLKNLAEVLKAGGAKIDDVIKTTI
YLTDLSNFQIVNKVYSDFFNIENPPARACVEVSSLPKGVLVEIDCIAFLD
>Mature_129_residues
APKQVIKTSNAPDPVGPYNQAIKAGDFIYCSGQIAIDPAVNEITCLGDIEKETFQVLKNLAEVLKAGGAKIDDVIKTTIY
LTDLSNFQIVNKVYSDFFNIENPPARACVEVSSLPKGVLVEIDCIAFLD

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=42.741935483871, Blast_Score=113, Evalue=6e-26,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=41.6, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=38.0952380952381, Blast_Score=99, Evalue=7e-23,
Organism=Escherichia coli, GI1787245, Length=127, Percent_Identity=30.7086614173228, Blast_Score=70, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=45.2380952380952, Blast_Score=119, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=45.2380952380952, Blast_Score=119, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=46.8253968253968, Blast_Score=119, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=36.3636363636364, Blast_Score=87, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=38.0952380952381, Blast_Score=77, Evalue=8e-16,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=43.2, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14094; Mature: 13963

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPKQVIKTSNAPDPVGPYNQAIKAGDFIYCSGQIAIDPAVNEITCLGDIEKETFQVLKN
CCCHHHHHCCCCCCCCCCHHHHHCCCCEEEECCEEEECCCCCEEEECCCCCHHHHHHHHH
LAEVLKAGGAKIDDVIKTTIYLTDLSNFQIVNKVYSDFFNIENPPARACVEVSSLPKGVL
HHHHHHCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCEE
VEIDCIAFLD
EEEEEEEECC
>Mature Secondary Structure 
APKQVIKTSNAPDPVGPYNQAIKAGDFIYCSGQIAIDPAVNEITCLGDIEKETFQVLKN
CCHHHHHCCCCCCCCCCHHHHHCCCCEEEECCEEEECCCCCEEEECCCCCHHHHHHHHH
LAEVLKAGGAKIDDVIKTTIYLTDLSNFQIVNKVYSDFFNIENPPARACVEVSSLPKGVL
HHHHHHCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCEE
VEIDCIAFLD
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]