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The map label for this gene is sms [H]

Identifier: 126695490

GI number: 126695490

Start: 141429

End: 142781

Strand: Reverse

Name: sms [H]

Synonym: P9301_01521

Alternate gene names: 126695490

Gene position: 142781-141429 (Counterclockwise)

Preceding gene: 126695496

Following gene: 126695488

Centisome position: 8.7

GC content: 31.04

Gene sequence:

>1353_bases
ATGTCTAGCAAATTATCAACTTTTATTTGTCAGAATTGCGGATCTGAAACTTCTCAATATTTTGGTAGATGCTTAAATTG
CAACTCATGGAATTCCATTGTTGAAGAAATAAAAAGTAAAAGATCTAATTATCAAGAAATTAAAAATAGTAAAAAATCTA
TATCATTTAACGAGATTTCATCAAAAAAAATATCAAGATTTACAAGTGGTTTTATGGAATTTGATCGAGTACTTGGAGGT
GGAATCGTTCCTGGATCTGTTGTTTTACTTGGAGGAGAACCAGGCATAGGCAAAAGCACAATAGTTCTTCAATCAGCAGG
AAAAATATCTCTAAATGAGAAAGTTTTATATATAACTGCAGAAGAATCTTTAGAACAAGTAAAAATTAGATGGGAAAGAT
TAAATCAAAATAGTATTGATTTAAAAATTTTTGCAGAAACCAATTTATCCCTAATTATTGAAGAAATCAAACGTTTAAAT
CCAAATTTCGCAATTATTGATAGTATTCAAGCCATCCACAATCATGAAATGCAAAGTGCTCCAGGATCGGTTTCTCAAGT
TAGAGCCTGTTCATCTGAATTACAAAATCTTGCAAAAGAAAATAATATTGCGCTTCTAATAATTGGTCATGTAACCAAAG
ATGGTGCTTTAGCTGGCCCTAAAACTCTAGAGCATTTAGTTGATACAGTAATAAACTTTGAAGGAGATAATATTTCCTCA
CATAGATTACTAAGAAGTATAAAAAATCGATTTGGATCTACCTTCGAGATTGGAATTTTTGAAATGCTTGATGAGGGTTT
ACGAGAGATAAAAAACCCAAGTTCAATTTTTACAAATAAAGAAAATATTTCAGGTGTAACAACTACTATTACAAATGAAG
GCACTCGACCATTAGCAGTTGATATACAAGCACTGGTAAATAAAACTTTCTACAGTAACCCAAGAAGGACTACCACTGGA
ATAAGTATCAATAGATTGCATCAAATCCTAGCTGTAATTGAAAAACATGTAGGGATAAAATTATCTGAATTTGATTGTTA
CATTGCTACTGGTGGGGGTTTTGAGATTAATGATCCTTCATCTGACTTAGGTGTAGCAATATCAATTTTATCCAGTTTGA
AAAATATTCCTCCTTTGACTAGTTGCACATTTATTGGAGAATTGGGTTTGAGCGGTCAGGTTAGAAAATCTAATAACCTT
CGAACAAAGATAGAAGAAGCTGTAAGACTAGGGATCAAAAATATCGTAGTGCCAAAACTAGAGGAGGAACTAAATAATAA
TTTTCAAAATTTAATAAATATCAAAGAGATATCCAATATTAAAGAAGCAGTTGACTATTCTTTATCAGTTTAA

Upstream 100 bases:

>100_bases
TATTAGCTAATCAGTAAGAGAATTAATTATTATCCTAATCTAACTTGTAGAGGGGCAATATCCCAAACATTCTAGTTCTA
ATACTTGATTCAAAAACTAA

Downstream 100 bases:

>100_bases
AAAATTAGAGATACATATCGATTGAACTTCTTCCTGAGTTTTTCAACCAATTCTCTATGTCTAGATAACCACCTGGGTAT
AATCTTACTGCTTTAGACCA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSNYQEIKNSKKSISFNEISSKKISRFTSGFMEFDRVLGG
GIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYITAEESLEQVKIRWERLNQNSIDLKIFAETNLSLIIEEIKRLN
PNFAIIDSIQAIHNHEMQSAPGSVSQVRACSSELQNLAKENNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
HRLLRSIKNRFGSTFEIGIFEMLDEGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAVDIQALVNKTFYSNPRRTTTG
ISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPSSDLGVAISILSSLKNIPPLTSCTFIGELGLSGQVRKSNNL
RTKIEEAVRLGIKNIVVPKLEEELNNNFQNLINIKEISNIKEAVDYSLSV

Sequences:

>Translated_450_residues
MSSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSNYQEIKNSKKSISFNEISSKKISRFTSGFMEFDRVLGG
GIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYITAEESLEQVKIRWERLNQNSIDLKIFAETNLSLIIEEIKRLN
PNFAIIDSIQAIHNHEMQSAPGSVSQVRACSSELQNLAKENNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
HRLLRSIKNRFGSTFEIGIFEMLDEGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAVDIQALVNKTFYSNPRRTTTG
ISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPSSDLGVAISILSSLKNIPPLTSCTFIGELGLSGQVRKSNNL
RTKIEEAVRLGIKNIVVPKLEEELNNNFQNLINIKEISNIKEAVDYSLSV
>Mature_449_residues
SSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSNYQEIKNSKKSISFNEISSKKISRFTSGFMEFDRVLGGG
IVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYITAEESLEQVKIRWERLNQNSIDLKIFAETNLSLIIEEIKRLNP
NFAIIDSIQAIHNHEMQSAPGSVSQVRACSSELQNLAKENNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISSH
RLLRSIKNRFGSTFEIGIFEMLDEGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAVDIQALVNKTFYSNPRRTTTGI
SINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPSSDLGVAISILSSLKNIPPLTSCTFIGELGLSGQVRKSNNLR
TKIEEAVRLGIKNIVVPKLEEELNNNFQNLINIKEISNIKEAVDYSLSV

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=423, Percent_Identity=40.8983451536643, Blast_Score=363, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49606; Mature: 49475

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSNYQEIKNSKKSISFNEIS
CCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHH
SKKISRFTSGFMEFDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYITA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEECCEEEEEEC
EESLEQVKIRWERLNQNSIDLKIFAETNLSLIIEEIKRLNPNFAIIDSIQAIHNHEMQSA
HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEHHHHHHHHHCCHHHCC
PGSVSQVRACSSELQNLAKENNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
CCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHH
HRLLRSIKNRFGSTFEIGIFEMLDEGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAV
HHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCCCCCEE
DIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPS
EHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEEECCCEEECCCC
SDLGVAISILSSLKNIPPLTSCTFIGELGLSGQVRKSNNLRTKIEEAVRLGIKNIVVPKL
CHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHH
EEELNNNFQNLINIKEISNIKEAVDYSLSV
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSKLSTFICQNCGSETSQYFGRCLNCNSWNSIVEEIKSKRSNYQEIKNSKKSISFNEIS
CCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHH
SKKISRFTSGFMEFDRVLGGGIVPGSVVLLGGEPGIGKSTIVLQSAGKISLNEKVLYITA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCEEECCEEEEEEC
EESLEQVKIRWERLNQNSIDLKIFAETNLSLIIEEIKRLNPNFAIIDSIQAIHNHEMQSA
HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEHHHHHHHHHCCHHHCC
PGSVSQVRACSSELQNLAKENNIALLIIGHVTKDGALAGPKTLEHLVDTVINFEGDNISS
CCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHH
HRLLRSIKNRFGSTFEIGIFEMLDEGLREIKNPSSIFTNKENISGVTTTITNEGTRPLAV
HHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCCCCCEE
DIQALVNKTFYSNPRRTTTGISINRLHQILAVIEKHVGIKLSEFDCYIATGGGFEINDPS
EHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEEEEEECCCEEECCCC
SDLGVAISILSSLKNIPPLTSCTFIGELGLSGQVRKSNNLRTKIEEAVRLGIKNIVVPKL
CHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHH
EEELNNNFQNLINIKEISNIKEAVDYSLSV
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]