Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126699226
Identifier: 126699226
GI number: 126699226
Start: 1878219
End: 1878836
Strand: Direct
Name: 126699226
Synonym: CD1622
Alternate gene names: NA
Gene position: 1878219-1878836 (Clockwise)
Preceding gene: 126699225
Following gene: 126699227
Centisome position: 43.78
GC content: 27.02
Gene sequence:
>618_bases ATGTGTAAAAAAACGTATTTATTAGTGGTAAGTATGCTTATAGCGGGTTTATTAACTGCATGTAGTGGGAGTCCAACTAA GGATTCAGGACAAGCACAAGATAATACAAAAAAGGAGGCAAATGCATCAAATAACGCTTTAAAAGATGAAAAAAATAATG AAAATTTAATGGAACAAGATTTTAAAGTGCCATACACAGATGCAATAAACATATTTAAAGATAAATATAAGGATGCTGAT ATAGTAGATTTAAGTCTTGAGAGAGATTTAAATAAATTTGTTTATACTGTGGAAGGTGTAGATGATAATAATGAATATAA GATGAAAATTGATGCTAATACAAAAGATGTATTAGAAGATAAAACAGAAAAGTTGGATTCAGAAGATTTAAATGGAGTTG CTAGAAAAGAAAAATTAGATTTAAATGACATAATGACACCTCAACAAGCTATGGAAATTGCATTAAAAGAACAAAATGGA ATAGTTAAAGAATGGAGTTTAGACAAAGATTTAGATGTTACTTTTTATAAAATAAGAATAGATAAAGATAAAAATGAATA TGACATAAAAGTAGATTCTAAAAAGGGAACTGTATTGAAGGTAGAAAAAGAAGATTAG
Upstream 100 bases:
>100_bases TAAAATTGATAAAATAGGAGGAATTTTTAATATAAAAGGGTAAATAAAGGGTTTAGAGGGCATAATATAGAATAAATTAA TATATTTAAGGAGGGTTTTT
Downstream 100 bases:
>100_bases AAGATTTAAACTATCTTTAAAATAATTTCTTTTTTGAATAAATTTTGTTTAAAATATAACAAGCAGGGTATAAAGAGACT AAATAACTATTTTAGGAGGA
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MCKKTYLLVVSMLIAGLLTACSGSPTKDSGQAQDNTKKEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDAD IVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNG IVKEWSLDKDLDVTFYKIRIDKDKNEYDIKVDSKKGTVLKVEKED
Sequences:
>Translated_205_residues MCKKTYLLVVSMLIAGLLTACSGSPTKDSGQAQDNTKKEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDAD IVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNG IVKEWSLDKDLDVTFYKIRIDKDKNEYDIKVDSKKGTVLKVEKED >Mature_205_residues MCKKTYLLVVSMLIAGLLTACSGSPTKDSGQAQDNTKKEANASNNALKDEKNNENLMEQDFKVPYTDAINIFKDKYKDAD IVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLEDKTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNG IVKEWSLDKDLDVTFYKIRIDKDKNEYDIKVDSKKGTVLKVEKED
Specific function: Unknown
COG id: COG3212
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23362; Mature: 23362
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKKTYLLVVSMLIAGLLTACSGSPTKDSGQAQDNTKKEANASNNALKDEKNNENLMEQD CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHH FKVPYTDAINIFKDKYKDADIVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLED CCCCHHHHHHHHHHHCCCCCEEEEHHHHCCCEEEEEEECCCCCCCEEEEECCCCHHHHHH KTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNGIVKEWSLDKDLDVTFYKIRI HHHHCCCHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEE DKDKNEYDIKVDSKKGTVLKVEKED ECCCCEEEEEEECCCCCEEEEECCC >Mature Secondary Structure MCKKTYLLVVSMLIAGLLTACSGSPTKDSGQAQDNTKKEANASNNALKDEKNNENLMEQD CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHH FKVPYTDAINIFKDKYKDADIVDLSLERDLNKFVYTVEGVDDNNEYKMKIDANTKDVLED CCCCHHHHHHHHHHHCCCCCEEEEHHHHCCCEEEEEEECCCCCCCEEEEECCCCHHHHHH KTEKLDSEDLNGVARKEKLDLNDIMTPQQAMEIALKEQNGIVKEWSLDKDLDVTFYKIRI HHHHCCCHHCCCHHHHHCCCHHHCCCHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEE DKDKNEYDIKVDSKKGTVLKVEKED ECCCCEEEEEEECCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA