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The map label for this gene is yciR [C]

Identifier: 126699220

GI number: 126699220

Start: 1871735

End: 1873279

Strand: Direct

Name: yciR [C]

Synonym: CD1616

Alternate gene names: 126699220

Gene position: 1871735-1873279 (Clockwise)

Preceding gene: 126699219

Following gene: 126699221

Centisome position: 43.63

GC content: 24.72

Gene sequence:

>1545_bases
ATGAGGAATTTACAAAAAAAATTAATGTTTTTTTTATTTATTTGTATAATTTTACAAATTACATACACAACACCAGTCTA
TTCTTTATGCAAACTCTATAAAAACAACTCCATAAATAACTTTGAGTCTATTGTGTCTAATAATCAGCTTATTAGCAAAC
ATGCAATACAAATAATACTTATTATGGCTATAATATGTGTAATACTTATATTCTATATAATATATGATAAATTAAATTTT
AAAATTAAATTGCAAAGGATAGCATATACAGATAATCTTACAGGAGCAAATACTATAGATAAATTTGTAATTGATGCTAA
CAAAATACTATGTAAAAATACTCAAGTAAAGTATGCTTTATTATATATAGATATTGATAAATTTAAATATATAAATGATT
TATTTGGATATGAAGTTGGGAATGAAATTTTGTGTAATTTAACAAAGATTATTAAGAGTAATATATTTGAAGAGGAAATG
TTTGCAAGAATATCTGCGGATAATTTTATTATAATTATGAAATATATAGAAGAAGAAGATATAACAAAGAGGTTAAAAAC
TATATTTGAAGAATTAGACTTGTTTAATAATAATCAAGAAGAAAAATATAAGTTAGTTTTAAGTTGTGGAATCTATTTTA
TACTTCCAGAAGATAGAGATATCAACTCAATCATAGATAGGGCTAATATACCTCATAAAATGGCAAAGGGAGGACATAAA
AGTTCATATGCATTTTATGATAATAAGATTCATGACCAAGAGATAAAAGAAAAAGAGATGGAAAATACAATGTTTTCAAG
TCTAGAAAATAAAGAATTTATTATATACTTACAACCTAAGATAGAACTTAATACAGGAGAGATACAAGGTTCAGAAGCAC
TTGTTAGGTGGAAACGTCCTGATAAAGGGCTAATACCTCCAAATGAATTTATCCCATTTTTTGAAAGAAACGGTTTTGTT
ATAAATTTAGATTTATATGTGCTTGAAGAAGTATGTATATACCTTAGAAAATGGATTGATGCAGGAATAAATCCAGTTAC
TGTTTCAGTTAATGTTTCAAGGATACATTTATATTGCAATAATTTTATAGAAACATACAAAAATATAATTGATAAATACA
ATATACCTGCAAAGTATATAGAACTTGAATTAACGGAGAGTATCATATTTGATAATTTTGATATTTTAATTGATATAATG
AATAATTTAAAAAAAATAGGATTTTTAATATCTATGGATGATTTTGGTTCAGGGTACTCATCATTAAATATGTTAAAAGA
AATTCCTATGGATATCTTAAAACTTGACCAAAAATTTATTATGGAAACTTATAATAGTAAAAGAAGCAAAATAATTGTTA
CTAAAGTAATAGAAATGGCAAAAGAGTTGGGTATGAAAGTCATATCAGAAGGAGTTGAGACAGAAGAACAGTTTAAACTT
TTAAAAGAAGTAAAGTGTGATATGGCACAAGGATATTTGTTTGGAAAGCCAATGCCAATTGAAGAATTTGAACATTTAAT
TGTATCTAACTTGGTAAGAGGGTAA

Upstream 100 bases:

>100_bases
TATTTTCTTTTCAAAACTATCCATTTTACAAGAAATGGAAACTTTTGAGATGTACTTATTTGCTAATAAAATAGAGGTGT
TTTAATGGGAGGAAATTTTT

Downstream 100 bases:

>100_bases
TTAATCTGTAATATAAAGAATTTAATAAATTGTGTTAAAAATGGACTCTAATGTAGTGTTCATTTTTTTTGTAAAATTTT
TTATACTTTTACTAAAAAGT

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MRNLQKKLMFFLFICIILQITYTTPVYSLCKLYKNNSINNFESIVSNNQLISKHAIQIILIMAIICVILIFYIIYDKLNF
KIKLQRIAYTDNLTGANTIDKFVIDANKILCKNTQVKYALLYIDIDKFKYINDLFGYEVGNEILCNLTKIIKSNIFEEEM
FARISADNFIIIMKYIEEEDITKRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHK
SSYAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDKGLIPPNEFIPFFERNGFV
INLDLYVLEEVCIYLRKWIDAGINPVTVSVNVSRIHLYCNNFIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIM
NNLKKIGFLISMDDFGSGYSSLNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKL
LKEVKCDMAQGYLFGKPMPIEEFEHLIVSNLVRG

Sequences:

>Translated_514_residues
MRNLQKKLMFFLFICIILQITYTTPVYSLCKLYKNNSINNFESIVSNNQLISKHAIQIILIMAIICVILIFYIIYDKLNF
KIKLQRIAYTDNLTGANTIDKFVIDANKILCKNTQVKYALLYIDIDKFKYINDLFGYEVGNEILCNLTKIIKSNIFEEEM
FARISADNFIIIMKYIEEEDITKRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHK
SSYAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDKGLIPPNEFIPFFERNGFV
INLDLYVLEEVCIYLRKWIDAGINPVTVSVNVSRIHLYCNNFIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIM
NNLKKIGFLISMDDFGSGYSSLNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKL
LKEVKCDMAQGYLFGKPMPIEEFEHLIVSNLVRG
>Mature_514_residues
MRNLQKKLMFFLFICIILQITYTTPVYSLCKLYKNNSINNFESIVSNNQLISKHAIQIILIMAIICVILIFYIIYDKLNF
KIKLQRIAYTDNLTGANTIDKFVIDANKILCKNTQVKYALLYIDIDKFKYINDLFGYEVGNEILCNLTKIIKSNIFEEEM
FARISADNFIIIMKYIEEEDITKRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHK
SSYAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDKGLIPPNEFIPFFERNGFV
INLDLYVLEEVCIYLRKWIDAGINPVTVSVNVSRIHLYCNNFIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIM
NNLKKIGFLISMDDFGSGYSSLNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKL
LKEVKCDMAQGYLFGKPMPIEEFEHLIVSNLVRG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=30.8411214953271, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI87081921, Length=393, Percent_Identity=26.2086513994911, Blast_Score=182, Evalue=6e-47,
Organism=Escherichia coli, GI226510982, Length=371, Percent_Identity=30.188679245283, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=33.7301587301587, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=31.9327731092437, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=29.6296296296296, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=30.379746835443, Blast_Score=131, Evalue=9e-32,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=28.5714285714286, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87082096, Length=500, Percent_Identity=22.8, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=30.8333333333333, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=29.0196078431373, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=430, Percent_Identity=24.1860465116279, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787410, Length=122, Percent_Identity=30.327868852459, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 60135; Mature: 60135

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLQKKLMFFLFICIILQITYTTPVYSLCKLYKNNSINNFESIVSNNQLISKHAIQIIL
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHH
IMAIICVILIFYIIYDKLNFKIKLQRIAYTDNLTGANTIDKFVIDANKILCKNTQVKYAL
HHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCEEECCCCEEEEE
LYIDIDKFKYINDLFGYEVGNEILCNLTKIIKSNIFEEEMFARISADNFIIIMKYIEEED
EEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEHHCHHH
ITKRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHK
HHHHHHHHHHHHHHCCCCCHHHHEEEEECCEEEEECCCCCHHHHHHHCCCCHHHHCCCCC
SSYAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRP
CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCCCEEEECCC
DKGLIPPNEFIPFFERNGFVINLDLYVLEEVCIYLRKWIDAGINPVTVSVNVSRIHLYCN
CCCCCCCCCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEHHH
NFIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYS
HHHHHHHHHHHCCCCCHHHEEEEEHHHHHHCCHHHHHHHHHHHHHHCEEEEECCCCCCHH
SLNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKL
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LKEVKCDMAQGYLFGKPMPIEEFEHLIVSNLVRG
HHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRNLQKKLMFFLFICIILQITYTTPVYSLCKLYKNNSINNFESIVSNNQLISKHAIQIIL
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHH
IMAIICVILIFYIIYDKLNFKIKLQRIAYTDNLTGANTIDKFVIDANKILCKNTQVKYAL
HHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCEEECCCCEEEEE
LYIDIDKFKYINDLFGYEVGNEILCNLTKIIKSNIFEEEMFARISADNFIIIMKYIEEED
EEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEHHCHHH
ITKRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHK
HHHHHHHHHHHHHHCCCCCHHHHEEEEECCEEEEECCCCCHHHHHHHCCCCHHHHCCCCC
SSYAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRP
CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCCCEEEECCC
DKGLIPPNEFIPFFERNGFVINLDLYVLEEVCIYLRKWIDAGINPVTVSVNVSRIHLYCN
CCCCCCCCCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEHHH
NFIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYS
HHHHHHHHHHHCCCCCHHHEEEEEHHHHHHCCHHHHHHHHHHHHHHCEEEEECCCCCCHH
SLNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKL
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LKEVKCDMAQGYLFGKPMPIEEFEHLIVSNLVRG
HHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]