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The map label for this gene is yhcF [H]

Identifier: 126699221

GI number: 126699221

Start: 1873455

End: 1873823

Strand: Direct

Name: yhcF [H]

Synonym: CD1617

Alternate gene names: 126699221

Gene position: 1873455-1873823 (Clockwise)

Preceding gene: 126699220

Following gene: 126699222

Centisome position: 43.67

GC content: 29.0

Gene sequence:

>369_bases
ATGGAATGGGAACTTGATAATAACAAACCTATATATATACAATTAGTAGAACATTTAAAGTTAAAAATAATTTCAGGGGA
AATTAAAATAGGATCTAAATTAGAAACAGTGAGAGCACTAGCAGAAGATGCGGAAGTTAATCCAAATACAATGCAAAAGG
CTCTAACAGAACTTGAAAGACAAGGTTTAGTTTATAGTCAGAGAACTAAAGGAAGATTTGTAACAGATGATAAGGAAAAA
ATAAAAGCTATGAAAGAGGAAATAGCTAATGTGGAGATAAATACATTAAAAGTAACCTTAGAAAAGCTTGGATATGATAG
AGATGAAATGCTAAAACTTATTACAGAAAATCTGAAAGGAGAATTATAA

Upstream 100 bases:

>100_bases
ATTTTTTATACTTTTACTAAAAAGTAATTGACATATACTTTGTATTATTATATTATTGTATTAACAACTTAATACAATAA
TATAATAAGGAGGCATGAAC

Downstream 100 bases:

>100_bases
AATGGATAAAAATATAAGCAATGTTTCTCAAGATGGAATAGTTGAATTTAAAGGTGTAAACAAGAGTTATGGAACTAAGA
ATGTTTTAAAAAATATTGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MEWELDNNKPIYIQLVEHLKLKIISGEIKIGSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQRTKGRFVTDDKEK
IKAMKEEIANVEINTLKVTLEKLGYDRDEMLKLITENLKGEL

Sequences:

>Translated_122_residues
MEWELDNNKPIYIQLVEHLKLKIISGEIKIGSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQRTKGRFVTDDKEK
IKAMKEEIANVEINTLKVTLEKLGYDRDEMLKLITENLKGEL
>Mature_122_residues
MEWELDNNKPIYIQLVEHLKLKIISGEIKIGSKLETVRALAEDAEVNPNTMQKALTELERQGLVYSQRTKGRFVTDDKEK
IKAMKEEIANVEINTLKVTLEKLGYDRDEMLKLITENLKGEL

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14073; Mature: 14073

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWELDNNKPIYIQLVEHLKLKIISGEIKIGSKLETVRALAEDAEVNPNTMQKALTELER
CCCCCCCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QGLVYSQRTKGRFVTDDKEKIKAMKEEIANVEINTLKVTLEKLGYDRDEMLKLITENLKG
CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
EL
CC
>Mature Secondary Structure
MEWELDNNKPIYIQLVEHLKLKIISGEIKIGSKLETVRALAEDAEVNPNTMQKALTELER
CCCCCCCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QGLVYSQRTKGRFVTDDKEKIKAMKEEIANVEINTLKVTLEKLGYDRDEMLKLITENLKG
CCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
EL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]