Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is nagA [H]
Identifier: 126698594
GI number: 126698594
Start: 1177895
End: 1179037
Strand: Direct
Name: nagA [H]
Synonym: CD1010
Alternate gene names: 126698594
Gene position: 1177895-1179037 (Clockwise)
Preceding gene: 126698593
Following gene: 126698595
Centisome position: 27.46
GC content: 28.78
Gene sequence:
>1143_bases GTGAATAATATGAAATGTTTAATTAATGGAAAGATAATATTAAAAAATCAAATCTTAGAAAATAAAGTATTAGTATTTGA TGAAAAAATAATTGATATAGCTGATAGTGTACCAAAAGATTGTGAAGTTATAGATGCTGATGGAAAATATATATCTCCAG GGCTTATTGATATTCATATACATGGAAACATGGGAAAAGATACAATGGATTCGACTGATGAATCTATTGAAACAATTTCA AAATCAATTATGAGACATGGAGTAACATCTTTTCTTCCAACTACAATGACTATGGATAAAGAACATGTTTATGATGCACT TGAAGTTATTAAAAAAGCCCAAAATAGAAAGCTTGAAGGGGCACAAGTATTAGGAGCACATTTAGAAGGACCTTTTATAA ATGAGAATTATAAGGGAGCACAAAATGAAAAATTTATAATAAATTCAAAATACGAATTTATAAAAGAATATAAAGATGTT ATAAAAGTTATAACTTATGCTCCAGAAAAAGATATTGATTTTGATTTTACTAGAGAAATAAAAAGATGTACAGATATAGT TTTATCTATTGGTCATAGTAATGCAAATTATGACCAAGCTAAAGAAGCTATAAATTTAGGAGTAACTAATGTAACTCACA TGTTCAATGCAATGACTGGTTTAAACCATAGAGACCCAGGCGTTGTTGGTGCAGCACTTACAACTAATGTGTACAGTGAG TTAATAGCAGATACAATCCATATAAATAAAGATTTATTTCAATTTATACTAAATAATAAAGGAAAAGAAAGACTGATTTT AATAACAGATTCTATAGAAGCTGGTGGTCTTGAAGATGGCAATTATTCTCTTGGAGGTCAGAAAGTCATAGTTAAGGGGA ATGAAGCTAGACTTGAAAATGGAGCATTAGCTGGAAGTGTGTTGTCTTTAAATAAAATGGTATTTAACTTCTTAGATAAT ACAAACCTTAAAGTGAATGAAGCAATTAATTTAGCTTCTTTAAATCCAGCAACATCTTTGGGAATAAATGACAAAAAAGG AAGCTTAGAAATAGGTAAGGATGCAGATATAGCTGTATTTGATGAGAATTTAGATTGTAAAATGACACTTTGCTTGGGGG AAGTAGTATATAAAAATATATAG
Upstream 100 bases:
>100_bases TCATAGAAATTCCTATAATAGAGAAGGTAGCCCTATAGAATATACCATATCAATATTTAGAACAGATAAATATCAATATG AAATAGTATTGAGTGAGTAG
Downstream 100 bases:
>100_bases TATACAAAACAAACTTTAAAGACAGTAAAAACAATATAAAAAATAATAAATTAAACTTACATTAGTAAAAGTAGTAGTTA AAATTTAGGAGGAATAAGAT
Product: N-acetylglucosamine-6-phosphate deacetylase
Products: NA
Alternate protein names: GlcNAc 6-P deacetylase [H]
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHIHGNMGKDTMDSTDESIETIS KSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEGAQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDV IKVITYAPEKDIDFDFTREIKRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLENGALAGSVLSLNKMVFNFLDN TNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVFDENLDCKMTLCLGEVVYKNI
Sequences:
>Translated_380_residues MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHIHGNMGKDTMDSTDESIETIS KSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEGAQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDV IKVITYAPEKDIDFDFTREIKRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLENGALAGSVLSLNKMVFNFLDN TNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVFDENLDCKMTLCLGEVVYKNI >Mature_380_residues MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHIHGNMGKDTMDSTDESIETIS KSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEGAQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDV IKVITYAPEKDIDFDFTREIKRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLENGALAGSVLSLNKMVFNFLDN TNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVFDENLDCKMTLCLGEVVYKNI
Specific function: N-acetylglucosamine utilization. [C]
COG id: COG1820
COG function: function code G; N-acetylglucosamine-6-phosphate deacetylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nagA family [H]
Homologues:
Organism=Homo sapiens, GI21361513, Length=431, Percent_Identity=31.322505800464, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI224922791, Length=429, Percent_Identity=31.2354312354312, Blast_Score=196, Evalue=3e-50, Organism=Escherichia coli, GI1786892, Length=387, Percent_Identity=29.4573643410853, Blast_Score=171, Evalue=8e-44, Organism=Caenorhabditis elegans, GI17553768, Length=387, Percent_Identity=35.4005167958656, Blast_Score=206, Evalue=2e-53, Organism=Drosophila melanogaster, GI19920392, Length=391, Percent_Identity=32.9923273657289, Blast_Score=192, Evalue=5e-49, Organism=Drosophila melanogaster, GI281361140, Length=405, Percent_Identity=31.1111111111111, Blast_Score=184, Evalue=6e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR003764 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.1.25 [H]
Molecular weight: Translated: 42005; Mature: 42005
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHI CCCCEEEEECEEEEECHHHCCEEEEEHHHHHHHHHCCCCCCEEEECCCCEECCCEEEEEE HGNMGKDTMDSTDESIETISKSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEG ECCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC AQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDVIKVITYAPEKDIDFDFTREI HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH KRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLEN HHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHCCC GALAGSVLSLNKMVFNFLDNTNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVF CCHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEE DENLDCKMTLCLGEVVYKNI CCCCCEEEEHHHHHHHHHCC >Mature Secondary Structure MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHI CCCCEEEEECEEEEECHHHCCEEEEEHHHHHHHHHCCCCCCEEEECCCCEECCCEEEEEE HGNMGKDTMDSTDESIETISKSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEG ECCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC AQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDVIKVITYAPEKDIDFDFTREI HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH KRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLEN HHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHCCC GALAGSVLSLNKMVFNFLDNTNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVF CCHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEE DENLDCKMTLCLGEVVYKNI CCCCCEEEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]