The gene/protein map for NC_009089 is currently unavailable.
Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is nagA [H]

Identifier: 126698594

GI number: 126698594

Start: 1177895

End: 1179037

Strand: Direct

Name: nagA [H]

Synonym: CD1010

Alternate gene names: 126698594

Gene position: 1177895-1179037 (Clockwise)

Preceding gene: 126698593

Following gene: 126698595

Centisome position: 27.46

GC content: 28.78

Gene sequence:

>1143_bases
GTGAATAATATGAAATGTTTAATTAATGGAAAGATAATATTAAAAAATCAAATCTTAGAAAATAAAGTATTAGTATTTGA
TGAAAAAATAATTGATATAGCTGATAGTGTACCAAAAGATTGTGAAGTTATAGATGCTGATGGAAAATATATATCTCCAG
GGCTTATTGATATTCATATACATGGAAACATGGGAAAAGATACAATGGATTCGACTGATGAATCTATTGAAACAATTTCA
AAATCAATTATGAGACATGGAGTAACATCTTTTCTTCCAACTACAATGACTATGGATAAAGAACATGTTTATGATGCACT
TGAAGTTATTAAAAAAGCCCAAAATAGAAAGCTTGAAGGGGCACAAGTATTAGGAGCACATTTAGAAGGACCTTTTATAA
ATGAGAATTATAAGGGAGCACAAAATGAAAAATTTATAATAAATTCAAAATACGAATTTATAAAAGAATATAAAGATGTT
ATAAAAGTTATAACTTATGCTCCAGAAAAAGATATTGATTTTGATTTTACTAGAGAAATAAAAAGATGTACAGATATAGT
TTTATCTATTGGTCATAGTAATGCAAATTATGACCAAGCTAAAGAAGCTATAAATTTAGGAGTAACTAATGTAACTCACA
TGTTCAATGCAATGACTGGTTTAAACCATAGAGACCCAGGCGTTGTTGGTGCAGCACTTACAACTAATGTGTACAGTGAG
TTAATAGCAGATACAATCCATATAAATAAAGATTTATTTCAATTTATACTAAATAATAAAGGAAAAGAAAGACTGATTTT
AATAACAGATTCTATAGAAGCTGGTGGTCTTGAAGATGGCAATTATTCTCTTGGAGGTCAGAAAGTCATAGTTAAGGGGA
ATGAAGCTAGACTTGAAAATGGAGCATTAGCTGGAAGTGTGTTGTCTTTAAATAAAATGGTATTTAACTTCTTAGATAAT
ACAAACCTTAAAGTGAATGAAGCAATTAATTTAGCTTCTTTAAATCCAGCAACATCTTTGGGAATAAATGACAAAAAAGG
AAGCTTAGAAATAGGTAAGGATGCAGATATAGCTGTATTTGATGAGAATTTAGATTGTAAAATGACACTTTGCTTGGGGG
AAGTAGTATATAAAAATATATAG

Upstream 100 bases:

>100_bases
TCATAGAAATTCCTATAATAGAGAAGGTAGCCCTATAGAATATACCATATCAATATTTAGAACAGATAAATATCAATATG
AAATAGTATTGAGTGAGTAG

Downstream 100 bases:

>100_bases
TATACAAAACAAACTTTAAAGACAGTAAAAACAATATAAAAAATAATAAATTAAACTTACATTAGTAAAAGTAGTAGTTA
AAATTTAGGAGGAATAAGAT

Product: N-acetylglucosamine-6-phosphate deacetylase

Products: NA

Alternate protein names: GlcNAc 6-P deacetylase [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHIHGNMGKDTMDSTDESIETIS
KSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEGAQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDV
IKVITYAPEKDIDFDFTREIKRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE
LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLENGALAGSVLSLNKMVFNFLDN
TNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVFDENLDCKMTLCLGEVVYKNI

Sequences:

>Translated_380_residues
MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHIHGNMGKDTMDSTDESIETIS
KSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEGAQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDV
IKVITYAPEKDIDFDFTREIKRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE
LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLENGALAGSVLSLNKMVFNFLDN
TNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVFDENLDCKMTLCLGEVVYKNI
>Mature_380_residues
MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHIHGNMGKDTMDSTDESIETIS
KSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEGAQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDV
IKVITYAPEKDIDFDFTREIKRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE
LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLENGALAGSVLSLNKMVFNFLDN
TNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVFDENLDCKMTLCLGEVVYKNI

Specific function: N-acetylglucosamine utilization. [C]

COG id: COG1820

COG function: function code G; N-acetylglucosamine-6-phosphate deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nagA family [H]

Homologues:

Organism=Homo sapiens, GI21361513, Length=431, Percent_Identity=31.322505800464, Blast_Score=199, Evalue=3e-51,
Organism=Homo sapiens, GI224922791, Length=429, Percent_Identity=31.2354312354312, Blast_Score=196, Evalue=3e-50,
Organism=Escherichia coli, GI1786892, Length=387, Percent_Identity=29.4573643410853, Blast_Score=171, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI17553768, Length=387, Percent_Identity=35.4005167958656, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI19920392, Length=391, Percent_Identity=32.9923273657289, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI281361140, Length=405, Percent_Identity=31.1111111111111, Blast_Score=184, Evalue=6e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006680
- InterPro:   IPR003764
- InterPro:   IPR011059 [H]

Pfam domain/function: PF01979 Amidohydro_1 [H]

EC number: =3.5.1.25 [H]

Molecular weight: Translated: 42005; Mature: 42005

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHI
CCCCEEEEECEEEEECHHHCCEEEEEHHHHHHHHHCCCCCCEEEECCCCEECCCEEEEEE
HGNMGKDTMDSTDESIETISKSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEG
ECCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
AQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDVIKVITYAPEKDIDFDFTREI
HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
KRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE
HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH
LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLEN
HHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHCCC
GALAGSVLSLNKMVFNFLDNTNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVF
CCHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEE
DENLDCKMTLCLGEVVYKNI
CCCCCEEEEHHHHHHHHHCC
>Mature Secondary Structure
MNNMKCLINGKIILKNQILENKVLVFDEKIIDIADSVPKDCEVIDADGKYISPGLIDIHI
CCCCEEEEECEEEEECHHHCCEEEEEHHHHHHHHHCCCCCCEEEECCCCEECCCEEEEEE
HGNMGKDTMDSTDESIETISKSIMRHGVTSFLPTTMTMDKEHVYDALEVIKKAQNRKLEG
ECCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
AQVLGAHLEGPFINENYKGAQNEKFIINSKYEFIKEYKDVIKVITYAPEKDIDFDFTREI
HHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
KRCTDIVLSIGHSNANYDQAKEAINLGVTNVTHMFNAMTGLNHRDPGVVGAALTTNVYSE
HHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH
LIADTIHINKDLFQFILNNKGKERLILITDSIEAGGLEDGNYSLGGQKVIVKGNEARLEN
HHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHCCC
GALAGSVLSLNKMVFNFLDNTNLKVNEAINLASLNPATSLGINDKKGSLEIGKDADIAVF
CCHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEE
DENLDCKMTLCLGEVVYKNI
CCCCCEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]