Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698580
Identifier: 126698580
GI number: 126698580
Start: 1161080
End: 1162330
Strand: Direct
Name: 126698580
Synonym: CD0996
Alternate gene names: NA
Gene position: 1161080-1162330 (Clockwise)
Preceding gene: 126698579
Following gene: 126698581
Centisome position: 27.06
GC content: 28.62
Gene sequence:
>1251_bases ATGGCAACAATTAAACCATTTAAGGCGATTAGACCAAATAAATATATAGTAGATAAAGTAGCAGCACTTCCTTACGATGT TATGAATAGTAAAGAAGCTAGAAGAATTGCAGAAGGGAATCCATATTCATTTTTGCATATAGATAAATCAGAAATTGATT TAGATGAAAATATAGATTTATATGATGAAAAAGTTTATTTAAAAGCGCGAGAAAATTTAGATGAGTTTCGAAAACAAGAA ATTCTAGTAAAAGATGACAAAGAGTGTATATATATATATAAACAAATCATGGATGGTAGAGCTCAAGTTGGTATAGTAGC ATGTATATCAGTTGATGAAAGCTTGAATGGAACAATAAAAAAACATGAGTACACTCGACCAGAAAAGGAAATTGATAGAA CTAAACACATAAAATACTGTGATGCTAATACGGGAACTATACTTGTAACTTACAAACATCAAAGGGTGATAGATGATATA ATCAATGATTTTATGGATAATAATGAACCTTTATATGATTTCATAACAGATGACAAGATAGAGCATACAGTATGGAAGAT TGATAATGATGATATAATAGATAACCTAGTAGATAAATTTGAAAAATTAGATTATCTATACATTGCAGATGGTCATCATA GGACAGCTTCAGCAGAAAATGTAGCCAAAGAAATGAGAGCTAAAAATCCAAATTATACTGGAAAAGAAGAATTTAATTAC TTCATAGCAATGATTGCACCAGATGAGAATTTAATGGTTTTGGATTATAATAGGGTTATCAAAGACTTAAATGGTTTAAG CGAGGAAGAATTTATAAATAAAATAAAAGAAAATTTTGAACTAGAAGAAATAGAAGGAAAAGAAAAATATAAACCTGACA AAAAAGGAACTTTCGGAATGTACCTAGGTGATAAGTGGTATAAAATGAAAGCAAATAAAAATTTATTAGAAATAGAAGAC CCTGTTGACTCATTAGACATTTCTATATTACAAGACTATGTTATTGATGCTATTTTAGGAATTGATAATCCTAGAGTAGA TAAAAGAATTGATTTTATCGGTGGAATTAGAGGTCTTGAAGAATTAGAAAAAAGAGTTAATGAAGATATGAAAGTAGCAT TTGCAATGTATCCTACTAGTATTGAAGATTTAATAAGAGTAGCAGATGCAAATAAGATAATGCCAGCTAAGTCAACATGG TTTGAACCTAAAGTAAGATGTGGTCTATTCTTACATGAAATAAATGAATAA
Upstream 100 bases:
>100_bases GACGAAATAGTAAATGTGATTCAAGATTTCTTTCTTGACTTCAACAATCTAATAGGGGTAGCATTATAAAATATTTTGTA TAATTAGGAGGAAATTAGTA
Downstream 100 bases:
>100_bases TTAATAAAGGGCTAAAAAGTGCACAATTCACTTTTTAGCCCTTGTTTTTTTGATTGAAAATCGTATGTGGAATATAAATT CTATAAGTTGATATTCTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MATIKPFKAIRPNKYIVDKVAALPYDVMNSKEARRIAEGNPYSFLHIDKSEIDLDENIDLYDEKVYLKARENLDEFRKQE ILVKDDKECIYIYKQIMDGRAQVGIVACISVDESLNGTIKKHEYTRPEKEIDRTKHIKYCDANTGTILVTYKHQRVIDDI INDFMDNNEPLYDFITDDKIEHTVWKIDNDDIIDNLVDKFEKLDYLYIADGHHRTASAENVAKEMRAKNPNYTGKEEFNY FIAMIAPDENLMVLDYNRVIKDLNGLSEEEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGDKWYKMKANKNLLEIED PVDSLDISILQDYVIDAILGIDNPRVDKRIDFIGGIRGLEELEKRVNEDMKVAFAMYPTSIEDLIRVADANKIMPAKSTW FEPKVRCGLFLHEINE
Sequences:
>Translated_416_residues MATIKPFKAIRPNKYIVDKVAALPYDVMNSKEARRIAEGNPYSFLHIDKSEIDLDENIDLYDEKVYLKARENLDEFRKQE ILVKDDKECIYIYKQIMDGRAQVGIVACISVDESLNGTIKKHEYTRPEKEIDRTKHIKYCDANTGTILVTYKHQRVIDDI INDFMDNNEPLYDFITDDKIEHTVWKIDNDDIIDNLVDKFEKLDYLYIADGHHRTASAENVAKEMRAKNPNYTGKEEFNY FIAMIAPDENLMVLDYNRVIKDLNGLSEEEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGDKWYKMKANKNLLEIED PVDSLDISILQDYVIDAILGIDNPRVDKRIDFIGGIRGLEELEKRVNEDMKVAFAMYPTSIEDLIRVADANKIMPAKSTW FEPKVRCGLFLHEINE >Mature_415_residues ATIKPFKAIRPNKYIVDKVAALPYDVMNSKEARRIAEGNPYSFLHIDKSEIDLDENIDLYDEKVYLKARENLDEFRKQEI LVKDDKECIYIYKQIMDGRAQVGIVACISVDESLNGTIKKHEYTRPEKEIDRTKHIKYCDANTGTILVTYKHQRVIDDII NDFMDNNEPLYDFITDDKIEHTVWKIDNDDIIDNLVDKFEKLDYLYIADGHHRTASAENVAKEMRAKNPNYTGKEEFNYF IAMIAPDENLMVLDYNRVIKDLNGLSEEEFINKIKENFELEEIEGKEKYKPDKKGTFGMYLGDKWYKMKANKNLLEIEDP VDSLDISILQDYVIDAILGIDNPRVDKRIDFIGGIRGLEELEKRVNEDMKVAFAMYPTSIEDLIRVADANKIMPAKSTWF EPKVRCGLFLHEINE
Specific function: Unknown
COG id: COG4198
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48532; Mature: 48401
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIKPFKAIRPNKYIVDKVAALPYDVMNSKEARRIAEGNPYSFLHIDKSEIDLDENIDL CCCCCCCHHCCCCHHHHHHHHHCCHHHHCCHHHHHHHCCCCEEEEEECHHHCCCCCCCCC YDEKVYLKARENLDEFRKQEILVKDDKECIYIYKQIMDGRAQVGIVACISVDESLNGTIK CCCEEEEEHHHCHHHHHHCCEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEE KHEYTRPEKEIDRTKHIKYCDANTGTILVTYKHQRVIDDIINDFMDNNEPLYDFITDDKI CCCCCCCHHHHHHHHCEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEECCCCCC EHTVWKIDNDDIIDNLVDKFEKLDYLYIADGHHRTASAENVAKEMRAKNPNYTGKEEFNY CEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE FIAMIAPDENLMVLDYNRVIKDLNGLSEEEFINKIKENFELEEIEGKEKYKPDKKGTFGM EEEEEECCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCHHCCCCCCCEEEE YLGDKWYKMKANKNLLEIEDPVDSLDISILQDYVIDAILGIDNPRVDKRIDFIGGIRGLE EECCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHH ELEKRVNEDMKVAFAMYPTSIEDLIRVADANKIMPAKSTWFEPKVRCGLFLHEINE HHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure ATIKPFKAIRPNKYIVDKVAALPYDVMNSKEARRIAEGNPYSFLHIDKSEIDLDENIDL CCCCCCHHCCCCHHHHHHHHHCCHHHHCCHHHHHHHCCCCEEEEEECHHHCCCCCCCCC YDEKVYLKARENLDEFRKQEILVKDDKECIYIYKQIMDGRAQVGIVACISVDESLNGTIK CCCEEEEEHHHCHHHHHHCCEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEE KHEYTRPEKEIDRTKHIKYCDANTGTILVTYKHQRVIDDIINDFMDNNEPLYDFITDDKI CCCCCCCHHHHHHHHCEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEECCCCCC EHTVWKIDNDDIIDNLVDKFEKLDYLYIADGHHRTASAENVAKEMRAKNPNYTGKEEFNY CEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEE FIAMIAPDENLMVLDYNRVIKDLNGLSEEEFINKIKENFELEEIEGKEKYKPDKKGTFGM EEEEEECCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCHHCCCCCCCEEEE YLGDKWYKMKANKNLLEIEDPVDSLDISILQDYVIDAILGIDNPRVDKRIDFIGGIRGLE EECCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHH ELEKRVNEDMKVAFAMYPTSIEDLIRVADANKIMPAKSTWFEPKVRCGLFLHEINE HHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA