Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is leuA [H]
Identifier: 126698573
GI number: 126698573
Start: 1152981
End: 1154723
Strand: Direct
Name: leuA [H]
Synonym: CD0989
Alternate gene names: 126698573
Gene position: 1152981-1154723 (Clockwise)
Preceding gene: 126698572
Following gene: 126698574
Centisome position: 26.87
GC content: 31.33
Gene sequence:
>1743_bases ATGAAGTGTGGAAAGTATAAAAAATATGATAAAATGCAAATAGTAAATCGTAAATGGCCAGATAATGAAATATTTAAGGC TCCAATTTGGTGTAGTGTCGATTTAAGAGACGGAAATCAGTCACTGCCAACACCTATGAGTGTAAATGAAAAAGTCAGAA TGTTCAAAATGCTTATTGATACAGGATTTAAAGAAATAGAGGTAGGATTTCCATCAGCATCAAATACAGAGTATACATTT TTAAGAAAATTAATAGATGAGAATATGATTCCAGATGATGTAACTATACAAGTACTTACACAATCTAGGGCTCATCTTAT AGAAAAAACATTTGAATCAATAAGGGGATGTAAAAAAGCAATTATACATTTATATAACTCTACATCTGTTCTTCAAAGAG ATGTGGTTTTTAATATGAGTAAACAAGAAATAATAGATATAGCAGTTGAAGGAGCAAAATTATTTAATGAAGAAGTAAAA AAATATCCAGAAACAGAATTTACTTTTGAATATTCACCAGAGAGTTTTACAGGAACAGAGATGGATTATGCACTTGAAAT ATGTGAGGCAGTGATAGATGTTTGGAAACCAACTCCTCAAAAAAAAGTAATAATAAATCTTCCATCAACAGTTGAAATGG CAACACCAAACGTATATGCAGACCAAATAGAATGGTTTTGTAAAAATATAAGTTGTAGGGATTCTATTATACTAAGTTTG CATACTCACAATGATAGAGGAACTTGTACGGCTGCAAGTGAACTTGGATTATTGGCTGGTGCCGATAGACTTGAAGGAAC ACTATTTGGAAATGGTGAAAGAACTGGGAATATGGATATAGTAAATGTGGGACTTAATCTTTATACACAAGGAATAGACC CAGAGCTAGATTTTAGCAATATAGATAAGATAATAGGTATATATGAAGACTGTACAAAACTTATGGTACATGATAGACAT CCATATGCAGGTAATCTTGTACATTGTGCTTTTTCAGGTTCACATCAAGATGCTATTAGAAAAGGCATGATAGCAATGAA AAACAGAGATAATGATTACTGGGAAGTTCCATATTTACCAATAGACCCTCATGATATTGGAAGAGAATACAAAGAAATTA TAAGGATAAATAGCCAATCTGGAAAAGGAGGAGCTGTTTATATAATGGAAACAGATTATGGATTTATGATACCTAAGAAT ATGCATTCTGATTTTGGAAATGTAGTCAAAATGGAATCTGATAGAATTGGGGAAGAACTTAGTAGTGAAGCAATATTTAA TTTGTTTAAGAAAGAATATATTGAAGTTGAGAGCCCTTATAAAGTTAAGAAGTATAAAATAAAATCAATGGATGAATTAA ACTATGAAAATGATGATTCTAATGATACTAACATGATTGAGATGACTGCAAGAATAAGTTATATGGGAAATGAACAAAGG ATTGTTGGTATAGGAAATGGACCTGTAGATTCATTTAATAATGCACTAAAGCAATGTGGCATGAAAGATTATAAATTTAG ATATTACTGGGAACATGCATTAGAGGAAGGGTCACATTCAAGAGGGGTAGCTTATGTAGGAATAGAGCACAATAATGAAG TCTATTTTGGTGTAAGTATATCGGAAAACATAAATACAGCAGCTATTAATGCACTTATGAATGCAATAAATAAAAGTTAT ATTGAGGAGGAAATAAAAAATGGGGATGACTATGACGCAGAAAATATTAGCCAAACATGCTAA
Upstream 100 bases:
>100_bases TATTCTAATGATAAAATTGACATTTATCCTTATGAATTGTGCAGGATTGCGTCGATATGAGGTATACTGAATACAAAAAA CAGAAAAAGGGGGAAATAAC
Downstream 100 bases:
>100_bases ATTAAATGAAGTTAAGAAAGGGCAATTAATCGAAGCAGATTTAGATGTAGTTTTAGGTAATGATATAACATCACCAGTAG CCATTAGAGAATTTGAAAAA
Product: 2-isopropylmalate synthase
Products: NA
Alternate protein names: Alpha-IPM synthase; Alpha-isopropylmalate synthase [H]
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MKCGKYKKYDKMQIVNRKWPDNEIFKAPIWCSVDLRDGNQSLPTPMSVNEKVRMFKMLIDTGFKEIEVGFPSASNTEYTF LRKLIDENMIPDDVTIQVLTQSRAHLIEKTFESIRGCKKAIIHLYNSTSVLQRDVVFNMSKQEIIDIAVEGAKLFNEEVK KYPETEFTFEYSPESFTGTEMDYALEICEAVIDVWKPTPQKKVIINLPSTVEMATPNVYADQIEWFCKNISCRDSIILSL HTHNDRGTCTAASELGLLAGADRLEGTLFGNGERTGNMDIVNVGLNLYTQGIDPELDFSNIDKIIGIYEDCTKLMVHDRH PYAGNLVHCAFSGSHQDAIRKGMIAMKNRDNDYWEVPYLPIDPHDIGREYKEIIRINSQSGKGGAVYIMETDYGFMIPKN MHSDFGNVVKMESDRIGEELSSEAIFNLFKKEYIEVESPYKVKKYKIKSMDELNYENDDSNDTNMIEMTARISYMGNEQR IVGIGNGPVDSFNNALKQCGMKDYKFRYYWEHALEEGSHSRGVAYVGIEHNNEVYFGVSISENINTAAINALMNAINKSY IEEEIKNGDDYDAENISQTC
Sequences:
>Translated_580_residues MKCGKYKKYDKMQIVNRKWPDNEIFKAPIWCSVDLRDGNQSLPTPMSVNEKVRMFKMLIDTGFKEIEVGFPSASNTEYTF LRKLIDENMIPDDVTIQVLTQSRAHLIEKTFESIRGCKKAIIHLYNSTSVLQRDVVFNMSKQEIIDIAVEGAKLFNEEVK KYPETEFTFEYSPESFTGTEMDYALEICEAVIDVWKPTPQKKVIINLPSTVEMATPNVYADQIEWFCKNISCRDSIILSL HTHNDRGTCTAASELGLLAGADRLEGTLFGNGERTGNMDIVNVGLNLYTQGIDPELDFSNIDKIIGIYEDCTKLMVHDRH PYAGNLVHCAFSGSHQDAIRKGMIAMKNRDNDYWEVPYLPIDPHDIGREYKEIIRINSQSGKGGAVYIMETDYGFMIPKN MHSDFGNVVKMESDRIGEELSSEAIFNLFKKEYIEVESPYKVKKYKIKSMDELNYENDDSNDTNMIEMTARISYMGNEQR IVGIGNGPVDSFNNALKQCGMKDYKFRYYWEHALEEGSHSRGVAYVGIEHNNEVYFGVSISENINTAAINALMNAINKSY IEEEIKNGDDYDAENISQTC >Mature_580_residues MKCGKYKKYDKMQIVNRKWPDNEIFKAPIWCSVDLRDGNQSLPTPMSVNEKVRMFKMLIDTGFKEIEVGFPSASNTEYTF LRKLIDENMIPDDVTIQVLTQSRAHLIEKTFESIRGCKKAIIHLYNSTSVLQRDVVFNMSKQEIIDIAVEGAKLFNEEVK KYPETEFTFEYSPESFTGTEMDYALEICEAVIDVWKPTPQKKVIINLPSTVEMATPNVYADQIEWFCKNISCRDSIILSL HTHNDRGTCTAASELGLLAGADRLEGTLFGNGERTGNMDIVNVGLNLYTQGIDPELDFSNIDKIIGIYEDCTKLMVHDRH PYAGNLVHCAFSGSHQDAIRKGMIAMKNRDNDYWEVPYLPIDPHDIGREYKEIIRINSQSGKGGAVYIMETDYGFMIPKN MHSDFGNVVKMESDRIGEELSSEAIFNLFKKEYIEVESPYKVKKYKIKSMDELNYENDDSNDTNMIEMTARISYMGNEQR IVGIGNGPVDSFNNALKQCGMKDYKFRYYWEHALEEGSHSRGVAYVGIEHNNEVYFGVSISENINTAAINALMNAINKSY IEEEIKNGDDYDAENISQTC
Specific function: Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate) [H]
COG id: COG0119
COG function: function code E; Isopropylmalate/homocitrate/citramalate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786261, Length=539, Percent_Identity=21.8923933209648, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6324225, Length=565, Percent_Identity=46.5486725663717, Blast_Score=523, Evalue=1e-149, Organism=Saccharomyces cerevisiae, GI6324682, Length=567, Percent_Identity=45.5026455026455, Blast_Score=501, Evalue=1e-142,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013709 - InterPro: IPR002034 - InterPro: IPR013785 - InterPro: IPR005668 - InterPro: IPR000891 [H]
Pfam domain/function: PF00682 HMGL-like; PF08502 LeuA_dimer [H]
EC number: =2.3.3.13 [H]
Molecular weight: Translated: 66157; Mature: 66157
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00815 AIPM_HOMOCIT_SYNTH_1 ; PS50991 PYR_CT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCGKYKKYDKMQIVNRKWPDNEIFKAPIWCSVDLRDGNQSLPTPMSVNEKVRMFKMLID CCCCCCCCCCHHHHHCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH TGFKEIEVGFPSASNTEYTFLRKLIDENMIPDDVTIQVLTQSRAHLIEKTFESIRGCKKA CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH IIHLYNSTSVLQRDVVFNMSKQEIIDIAVEGAKLFNEEVKKYPETEFTFEYSPESFTGTE HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC MDYALEICEAVIDVWKPTPQKKVIINLPSTVEMATPNVYADQIEWFCKNISCRDSIILSL HHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCEEEEEE HTHNDRGTCTAASELGLLAGADRLEGTLFGNGERTGNMDIVNVGLNLYTQGIDPELDFSN EECCCCCCEEEHHHCCHHCCCHHCCEEEEECCCCCCCEEEEEECEEEEECCCCCCCCHHH IDKIIGIYEDCTKLMVHDRHPYAGNLVHCAFSGSHQDAIRKGMIAMKNRDNDYWEVPYLP HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCEEEECCCCCEEECCEEC IDPHDIGREYKEIIRINSQSGKGGAVYIMETDYGFMIPKNMHSDFGNVVKMESDRIGEEL CCHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCEECCCHHCCCCCCEEEECHHHHHHHH SSEAIFNLFKKEYIEVESPYKVKKYKIKSMDELNYENDDSNDTNMIEMTARISYMGNEQR HHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCCCCCCCCCEEEEEEEEEEECCCCCE IVGIGNGPVDSFNNALKQCGMKDYKFRYYWEHALEEGSHSRGVAYVGIEHNNEVYFGVSI EEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEE SENINTAAINALMNAINKSYIEEEIKNGDDYDAENISQTC CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCC >Mature Secondary Structure MKCGKYKKYDKMQIVNRKWPDNEIFKAPIWCSVDLRDGNQSLPTPMSVNEKVRMFKMLID CCCCCCCCCCHHHHHCCCCCCCCEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH TGFKEIEVGFPSASNTEYTFLRKLIDENMIPDDVTIQVLTQSRAHLIEKTFESIRGCKKA CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH IIHLYNSTSVLQRDVVFNMSKQEIIDIAVEGAKLFNEEVKKYPETEFTFEYSPESFTGTE HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC MDYALEICEAVIDVWKPTPQKKVIINLPSTVEMATPNVYADQIEWFCKNISCRDSIILSL HHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCEEEEEE HTHNDRGTCTAASELGLLAGADRLEGTLFGNGERTGNMDIVNVGLNLYTQGIDPELDFSN EECCCCCCEEEHHHCCHHCCCHHCCEEEEECCCCCCCEEEEEECEEEEECCCCCCCCHHH IDKIIGIYEDCTKLMVHDRHPYAGNLVHCAFSGSHQDAIRKGMIAMKNRDNDYWEVPYLP HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHCCEEEECCCCCEEECCEEC IDPHDIGREYKEIIRINSQSGKGGAVYIMETDYGFMIPKNMHSDFGNVVKMESDRIGEEL CCHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCEECCCHHCCCCCCEEEECHHHHHHHH SSEAIFNLFKKEYIEVESPYKVKKYKIKSMDELNYENDDSNDTNMIEMTARISYMGNEQR HHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHCCCCCCCCCCCEEEEEEEEEEECCCCCE IVGIGNGPVDSFNNALKQCGMKDYKFRYYWEHALEEGSHSRGVAYVGIEHNNEVYFGVSI EEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEE SENINTAAINALMNAINKSYIEEEIKNGDDYDAENISQTC CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286 [H]