Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698572
Identifier: 126698572
GI number: 126698572
Start: 1152017
End: 1152463
Strand: Direct
Name: 126698572
Synonym: CD0988
Alternate gene names: NA
Gene position: 1152017-1152463 (Clockwise)
Preceding gene: 126698571
Following gene: 126698573
Centisome position: 26.85
GC content: 19.91
Gene sequence:
>447_bases TTGAGTAAAAATAAGTTTATCTATATGAATTATTATGACAATGGTTATTTTAAAAAAGGAATGACTATATATATGGTTTT AGCACTTATAATTTTAGCTACAATTTTTATATATTCAACGACAATATTATATATTTTATGTATAATAACAGCAGTTTTTC TATTTAAACAAGGTCGTGATTTTTCAAATAAATATGAGGGAAAAGTATATATTACTCTCGATAATCATTCAATATTAATA AATAATCAATGTATATTCAGTATAAAATCTAAACAAAGTCAAAAGTTTAATTATAAGATAATAGAAAAAATAGAAGTAGT AAAAAATATATTAAATATATACACTAACGAATCTAATTATAAAATTAGATTAAGGGCATTGAGTTTGGAAGATGAAAAAA AATTATTGAATATCATAGATGAAAAGATGAAAAAGTTTAAGGCATAA
Upstream 100 bases:
>100_bases AAGCAGTAGATTTTCCAGATGAATTAGTCATAAATTATCATGAAGATGAAATTATAGAATTTTTTGATATAAATTTTTAG AATCTTGGGAGTGAAAAAAT
Downstream 100 bases:
>100_bases TATCATACTGTTTTCAATAGTTAGCATGTTTTATAGAATTGCTTATCAAAAATAAAAAATTGAGATAATTATTTTTTGTG TTGACAATACATTTTAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MSKNKFIYMNYYDNGYFKKGMTIYMVLALIILATIFIYSTTILYILCIITAVFLFKQGRDFSNKYEGKVYITLDNHSILI NNQCIFSIKSKQSQKFNYKIIEKIEVVKNILNIYTNESNYKIRLRALSLEDEKKLLNIIDEKMKKFKA
Sequences:
>Translated_148_residues MSKNKFIYMNYYDNGYFKKGMTIYMVLALIILATIFIYSTTILYILCIITAVFLFKQGRDFSNKYEGKVYITLDNHSILI NNQCIFSIKSKQSQKFNYKIIEKIEVVKNILNIYTNESNYKIRLRALSLEDEKKLLNIIDEKMKKFKA >Mature_147_residues SKNKFIYMNYYDNGYFKKGMTIYMVLALIILATIFIYSTTILYILCIITAVFLFKQGRDFSNKYEGKVYITLDNHSILIN NQCIFSIKSKQSQKFNYKIIEKIEVVKNILNIYTNESNYKIRLRALSLEDEKKLLNIIDEKMKKFKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17565; Mature: 17434
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNKFIYMNYYDNGYFKKGMTIYMVLALIILATIFIYSTTILYILCIITAVFLFKQGRD CCCCCEEEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FSNKYEGKVYITLDNHSILINNQCIFSIKSKQSQKFNYKIIEKIEVVKNILNIYTNESNY CCCCCCCEEEEEECCCEEEEECEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE KIRLRALSLEDEKKLLNIIDEKMKKFKA EEEEEEECCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKNKFIYMNYYDNGYFKKGMTIYMVLALIILATIFIYSTTILYILCIITAVFLFKQGRD CCCCEEEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FSNKYEGKVYITLDNHSILINNQCIFSIKSKQSQKFNYKIIEKIEVVKNILNIYTNESNY CCCCCCCEEEEEECCCEEEEECEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE KIRLRALSLEDEKKLLNIIDEKMKKFKA EEEEEEECCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA