Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698541
Identifier: 126698541
GI number: 126698541
Start: 1125950
End: 1126510
Strand: Direct
Name: 126698541
Synonym: CD0957
Alternate gene names: NA
Gene position: 1125950-1126510 (Clockwise)
Preceding gene: 126698540
Following gene: 126698542
Centisome position: 26.24
GC content: 26.74
Gene sequence:
>561_bases ATGAAGAAAAAAGTATGTTTTTTATTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAG TCCAGAGGAGAGTAGTAAAAATAATGAACCAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTA TTTCAGATAAAATGGAAATCACTATTAATAATATTGAATTCTCTTATGATGTTTTACCAAAGGTTAAGGAAAGTTTATAT ACACATTATCCTGCTGAGTCAGGCAAAGTATATATTGATATTGCTGCTGATATAAAAAATACTCAAAAACAAGAGTTAAA TTGTTCAGATTTACTAACTATTGAAGCAAATTATAATGATGGGTATAAATATTCATCACAAACAATAGTAGAAGATGAAA CCACAGGTTTTACTTATGATAATATTTCTAGTATTGACCCTTTAGAAACAAAGGGAGTTAGATTTATAATCGATTGCCCT GATGAAGTAAAAACAAGTGATAAGCCAGTAATATTAAGTTTTACATTTGATGGGAATAAGTATGTTTATAAAATGAAGTA A
Upstream 100 bases:
>100_bases AGTAAGTGTTTTTTTAATGAAAGGAGGTGATAATAATGTAAAAATTTTACTAATATAGTATAATATTGTTAAAGAATATA ATTTAGGGGGATATTATATT
Downstream 100 bases:
>100_bases TTTATACAAAAATGAATATATTATAATACCAAGGAGATATTTTATGGATGATATAGTAGAATATATATTTTGTAGCGAGT GTGGAGCAAAGTGTTTAAAA
Product: phage lipoprotein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 186; Mature: 186
Protein sequence:
>186_residues MKKKVCFLFSILIVICLAIVGCSNSESPEESSKNNEPKKEEKKDKEVVIGEKIISDKMEITINNIEFSYDVLPKVKESLY THYPAESGKVYIDIAADIKNTQKQELNCSDLLTIEANYNDGYKYSSQTIVEDETTGFTYDNISSIDPLETKGVRFIIDCP DEVKTSDKPVILSFTFDGNKYVYKMK
Sequences:
>Translated_186_residues MKKKVCFLFSILIVICLAIVGCSNSESPEESSKNNEPKKEEKKDKEVVIGEKIISDKMEITINNIEFSYDVLPKVKESLY THYPAESGKVYIDIAADIKNTQKQELNCSDLLTIEANYNDGYKYSSQTIVEDETTGFTYDNISSIDPLETKGVRFIIDCP DEVKTSDKPVILSFTFDGNKYVYKMK >Mature_186_residues MKKKVCFLFSILIVICLAIVGCSNSESPEESSKNNEPKKEEKKDKEVVIGEKIISDKMEITINNIEFSYDVLPKVKESLY THYPAESGKVYIDIAADIKNTQKQELNCSDLLTIEANYNDGYKYSSQTIVEDETTGFTYDNISSIDPLETKGVRFIIDCP DEVKTSDKPVILSFTFDGNKYVYKMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21116; Mature: 21116
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKVCFLFSILIVICLAIVGCSNSESPEESSKNNEPKKEEKKDKEVVIGEKIISDKMEI CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEECHHHHCCCEEE TINNIEFSYDVLPKVKESLYTHYPAESGKVYIDIAADIKNTQKQELNCSDLLTIEANYND EEEEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHCCCCCCEEEEEECCCC GYKYSSQTIVEDETTGFTYDNISSIDPLETKGVRFIIDCPDEVKTSDKPVILSFTFDGNK CEEECCCEEEECCCCCCEECCCCCCCCCCCCCEEEEEECCHHHCCCCCCEEEEEEECCCE YVYKMK EEEEEC >Mature Secondary Structure MKKKVCFLFSILIVICLAIVGCSNSESPEESSKNNEPKKEEKKDKEVVIGEKIISDKMEI CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEECHHHHCCCEEE TINNIEFSYDVLPKVKESLYTHYPAESGKVYIDIAADIKNTQKQELNCSDLLTIEANYND EEEEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHCCCCCCEEEEEECCCC GYKYSSQTIVEDETTGFTYDNISSIDPLETKGVRFIIDCPDEVKTSDKPVILSFTFDGNK CEEECCCEEEECCCCCCEECCCCCCCCCCCCCEEEEEECCHHHCCCCCCEEEEEEECCCE YVYKMK EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA