Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698542
Identifier: 126698542
GI number: 126698542
Start: 1126554
End: 1127123
Strand: Direct
Name: 126698542
Synonym: CD0958
Alternate gene names: NA
Gene position: 1126554-1127123 (Clockwise)
Preceding gene: 126698541
Following gene: 126698543
Centisome position: 26.26
GC content: 31.75
Gene sequence:
>570_bases ATGGATGATATAGTAGAATATATATTTTGTAGCGAGTGTGGAGCAAAGTGTTTAAAAGGAAGCAAGTTTTGCAGTGAATG TGGAACGGAAATAGCTGATATAAAAATGTTAAATGAAAGCATTATTAAAGAAAAGGAATATGATTTGAAGGGTATTGATT TACAACATGTAATGCAAGAAACAAGTTTTATAAAAGCTTCATCTGTAAGAAGATTGAAAGAATTAACTGGAATAGAGTTG GATGATTGTAGAAAAATATTAGAAGAACCATATCAAAAATATTATAATGAAAATGCTGATATGCTTGAAGAAAAAAGAAA AAAAGAAGATGATATATCAAAAATTAGAAAAGCCAAAGAGGAAAAGAAAGAAAAAGAAAAAATAGCTTGTTGCCCTGCAT GTGGTTCAACTTCTTTGACAACACATAAAAAAGGTTTTGGCATAGGAAAAGCTATAACAGGAGCTACTATAGCAGGAGGC ATTGGTCTCGTAGCAGGAAACATAGGAGCAAAGAAAGTTAGAGTTACATGCTTGAACTGTGGGAAACAGTTTTGGGCAGG CAAAAAATAG
Upstream 100 bases:
>100_bases CCAGTAATATTAAGTTTTACATTTGATGGGAATAAGTATGTTTATAAAATGAAGTAATTTATACAAAAATGAATATATTA TAATACCAAGGAGATATTTT
Downstream 100 bases:
>100_bases ATACTAAAAATAAAACACTTACTTAGGTAGGTGTTTTTTATGTGAAAATTTAAGAAAGGAGAGTGAAGAAATGGCTACAA TACAAACATCTATCCGTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MDDIVEYIFCSECGAKCLKGSKFCSECGTEIADIKMLNESIIKEKEYDLKGIDLQHVMQETSFIKASSVRRLKELTGIEL DDCRKILEEPYQKYYNENADMLEEKRKKEDDISKIRKAKEEKKEKEKIACCPACGSTSLTTHKKGFGIGKAITGATIAGG IGLVAGNIGAKKVRVTCLNCGKQFWAGKK
Sequences:
>Translated_189_residues MDDIVEYIFCSECGAKCLKGSKFCSECGTEIADIKMLNESIIKEKEYDLKGIDLQHVMQETSFIKASSVRRLKELTGIEL DDCRKILEEPYQKYYNENADMLEEKRKKEDDISKIRKAKEEKKEKEKIACCPACGSTSLTTHKKGFGIGKAITGATIAGG IGLVAGNIGAKKVRVTCLNCGKQFWAGKK >Mature_189_residues MDDIVEYIFCSECGAKCLKGSKFCSECGTEIADIKMLNESIIKEKEYDLKGIDLQHVMQETSFIKASSVRRLKELTGIEL DDCRKILEEPYQKYYNENADMLEEKRKKEDDISKIRKAKEEKKEKEKIACCPACGSTSLTTHKKGFGIGKAITGATIAGG IGLVAGNIGAKKVRVTCLNCGKQFWAGKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21019; Mature: 21019
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 5.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDIVEYIFCSECGAKCLKGSKFCSECGTEIADIKMLNESIIKEKEYDLKGIDLQHVMQE CHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH TSFIKASSVRRLKELTGIELDDCRKILEEPYQKYYNENADMLEEKRKKEDDISKIRKAKE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH EKKEKEKIACCPACGSTSLTTHKKGFGIGKAITGATIAGGIGLVAGNIGAKKVRVTCLNC HHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH GKQFWAGKK HHHHCCCCC >Mature Secondary Structure MDDIVEYIFCSECGAKCLKGSKFCSECGTEIADIKMLNESIIKEKEYDLKGIDLQHVMQE CHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH TSFIKASSVRRLKELTGIELDDCRKILEEPYQKYYNENADMLEEKRKKEDDISKIRKAKE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH EKKEKEKIACCPACGSTSLTTHKKGFGIGKAITGATIAGGIGLVAGNIGAKKVRVTCLNC HHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH GKQFWAGKK HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA