Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 126447845

GI number: 126447845

Start: 1220432

End: 1221028

Strand: Direct

Name: pdtaR [H]

Synonym: BMA10247_A1255

Alternate gene names: 126447845

Gene position: 1220432-1221028 (Clockwise)

Preceding gene: 126447693

Following gene: 126447320

Centisome position: 51.87

GC content: 70.85

Gene sequence:

>597_bases
ATGGGAACGACCGACCAACCCTCCAAGCTGCGCGTGCTGCTCGTCACCGACACCGACAAGCCGATCGGCGAGCTGCGCGA
CACGCTCGCGCGCCTCGGCTACGAGATGCTCGACGAGGTCGCGACGCCCGCGCGGCTGCCCGCGGCCGTCGAGGAGCAGC
GCCCGGACGTCGTGATCATCGACACCGAATCGCCGTCGCGCGACACGCTCGAGCAGCTCGCGGTGATGAACGCGACCGCG
CCGCGCCCCGTGCTGATGTTCAGCCACGACGCCGACCAGCAGTTGATCCGCGCGGCGGTCGGCGCGGGCGTGAGCGCGTA
TCTGATCGAGGGGCTGTCCGCCGAGCGGCTCGCGCCGATCCTCGAAGTCGCGCTCGCGCGCTTCTCGCACGACGAGCAGT
TGCGCCAGCGGCTCGCCGAAGTCGAGAGCGAGCTCGCCGAGCGCAAGCTGATCGACCGCGCGAAGCGCATGCTGATGGAC
CGCCGCAAGCTGTCCGAACAGGACGCGTACGCGACGCTGCGCCGCAGCGCGATGGATCAGGGCATCCGGATCGTCGAGGC
GGCCCGCCGGCTGCTCGCGGCGCACTCGCAATCTTGA

Upstream 100 bases:

>100_bases
CGGCGCGAGCCGGCGCGGCGCACCGCGCCCGCGCGCGTATGGTAGAAACAAAGGCATGGGCGAGCGCCGCCGCGACGCGC
CCGCCTCTTCCGTCTGACAC

Downstream 100 bases:

>100_bases
ACGAAGGTGCAAAACGCATGAACACAGCGCGCATCAAAGCAGCGGCCGCCGATATGCCGGAACGCGCCCGCCTGCGCATC
GGCTTCGTCGCGCTGAGCGA

Product: response regulator/ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MGTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVIIDTESPSRDTLEQLAVMNATA
PRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPILEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMD
RRKLSEQDAYATLRRSAMDQGIRIVEAARRLLAAHSQS

Sequences:

>Translated_198_residues
MGTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVIIDTESPSRDTLEQLAVMNATA
PRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPILEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMD
RRKLSEQDAYATLRRSAMDQGIRIVEAARRLLAAHSQS
>Mature_197_residues
GTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVIIDTESPSRDTLEQLAVMNATAP
RPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPILEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMDR
RKLSEQDAYATLRRSAMDQGIRIVEAARRLLAAHSQS

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22024; Mature: 21892

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVII
CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCCEEEE
DTESPSRDTLEQLAVMNATAPRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPI
ECCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH
LEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMDRRKLSEQDAYATLRRSAMDQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIRIVEAARRLLAAHSQS
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GTTDQPSKLRVLLVTDTDKPIGELRDTLARLGYEMLDEVATPARLPAAVEEQRPDVVII
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCCEEEE
DTESPSRDTLEQLAVMNATAPRPVLMFSHDADQQLIRAAVGAGVSAYLIEGLSAERLAPI
ECCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH
LEVALARFSHDEQLRQRLAEVESELAERKLIDRAKRMLMDRRKLSEQDAYATLRRSAMDQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIRIVEAARRLLAAHSQS
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]